Expression of 1-1-8.4.18.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83677 | 0.31 |
27DAP/17DAP | 1.78242 | 0.474 |
39DAP/27DAP | 0.78879 | 0.425 |
41DAP/39DAP | 1.02184 | 0.994 |
42DAP/41DAP | 0.91176 | 1 |
43DAP/42DAP | 1.09585 | 0.976 |
47DAP/43DAP | 1.29426 | 0.647 |
52DAP/47DAP | 0.77609 | 0.463 |
57DAP/52DAP | 0.93604 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14414 | 0.116 |
17DAP/reference | 1.04988 | 0.248 |
27DAP/reference | 1.01251 | 0.909 |
39DAP/reference | 1.00787 | 0.8 |
41DAP/reference | 1.01951 | 0.667 |
42DAP/reference | 1.0719 | 0.084 |
43DAP/reference | 1.02656 | 0.73 |
47DAP/reference | 1.06403 | 0.136 |
52DAP/reference | 1.09009 | 0.272 |
57DAP/reference | 0.93259 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87868 | 0.442 |
27DAP/17DAP | 1.08957 | 0.909 |
39DAP/27DAP | 1.43355 | 0.249 |
41DAP/39DAP | 1.08697 | 1 |
42DAP/41DAP | 1.19917 | 0.446 |
43DAP/42DAP | 0.93768 | 0.618 |
47DAP/43DAP | 1.05071 | 0.92 |
52DAP/47DAP | 1.09714 | 0.844 |
57DAP/52DAP | 0.92384 | 0.584 |
57DAP/7DAP | 0.9246 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00034 | 1 |
17DAP/reference | 1.13088 | 0.399 |
27DAP/reference | 0.95323 | 0.375 |
39DAP/reference | 0.93161 | 0.264 |
41DAP/reference | 0.9754 | 0.489 |
42DAP/reference | 0.97512 | 0.482 |
43DAP/reference | 0.96213 | 0.368 |
47DAP/reference | 0.97108 | 0.504 |
52DAP/reference | 1.11938 | 0.098 |
57DAP/reference | 1.11287 | 0.536 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13787 | 0.203 |
17DAP/reference | 1.08991 | 0.036 |
27DAP/reference | 1.05835 | 0.618 |
39DAP/reference | 1.06844 | 0.514 |
41DAP/reference | 1.06333 | 0.573 |
42DAP/reference | 1.01144 | 1 |
43DAP/reference | 1.164 | 0.219 |
47DAP/reference | 0.96592 | 0.311 |
52DAP/reference | 1.08518 | 0.085 |
57DAP/reference | 1.12336 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95495 | 0.391 |
17DAP/reference | 1.0416 | 0.657 |
27DAP/reference | 1.00766 | 1 |
39DAP/reference | 1.09354 | 0.613 |
41DAP/reference | 1.10768 | 0.168 |
42DAP/reference | 0.93071 | 0.445 |
43DAP/reference | 1.04419 | 0.712 |
47DAP/reference | 1.00376 | 1 |
52DAP/reference | 0.88425 | 0.277 |
57DAP/reference | 0.81451 | 0.035 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97132 | 1 |
26DAP/20DAP | 0.86619 | 1 |
34DAP/26DAP | 1.15584 | 0.819 |
51DAP/34DAP | 0.90197 | 0.64 |
52DAP/51DAP | 0.79801 | 1 |
53DAP/52DAP | 1.2233 | 0.171 |
55DAP/53DAP | 1.0973 | 0.696 |
57DAP/55DAP | 1.43472 | 0.559 |
62DAP/57DAP | 1.09886 | 0.767 |
68DAP/62DAP | 0.81605 | 0.641 |
68DAP/14DAP | 0.96096 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.1692 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.32262 | 0.287 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.96746 | 1 |
Ripe Pepper/Ripe Tomato | 2.62778 | 1 |
Mature Eggplant/Ripe Tomato | 1.51222 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00728 | 1 |
1-1-2/M82 | 1.02687 | 1 |
12-2/M82 | 0.98681 | 0.955 |
12-4/M82 | 0.97035 | |
1-3/M82 | 0.94097 | 0.501 |
2-1-1/M82 | 1.10236 | 0.689 |
2-1/M82 | 1.00501 | 1 |
2-6/M82 | 1.03139 | 1 |
3-2/M82 | 1.00722 | |
4-1-1/M82 | 0.96276 | 1 |
4-1/M82 | 0.99143 | |
4-3-2/M82 | 1.07276 | |
4-3/M82 | 0.933 | 1 |
5-3/M82 | 0.99269 | 1 |
6-2/M82 | 0.96322 | 1 |
6-3/M82 | 1.00232 | 1 |
7-1/M82 | 1.00293 | |
7-2/M82 | 0.97664 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.8184 | |
IL2-6/WTpooled | 1.15146 | 0.788 |
IL7-5/WTpooled | 0.57235 | |
IL7-3/WTpooled | 0.98268 | 1 |
IL12-4/WTpooled | 0.9905 | 1 |
IL1-4/WTpooled | 1.09048 | |
WT/WTpooled | 1.08901 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04475 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.06625 | 1 |
DC3000/delta hrp 24h | 1.01749 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.36136 | 1 |
Exp 36h | 2.97668 | 0.489 |
Exp 60h | 0.9303 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95732 | 1 |
Var 0h | 1.14147 | 0.936 |
Var 12h I row2-row1 | 0.93978 | 0.856 |
Var 12h NI row2-row1 | 0.7526 | 0.546 |
Var 36h I row2-row1 | 0.75519 | 1 |
Var 36h NI row2-row1 | 1.59211 | 1 |
Var 60h I row2-row1 | 1.01558 | 1 |
Var 60h NI row2-row1 | 2.13158 | 0.904 |
Time course 0hI-0hNI | 1.35874 | 0.833 |
Time course 12hI-12hNI | 1.09251 | 0.85 |
Time course 36hI-36hNI | 0.7739 | 0.091 |
Time course 60hI-60hNI | 0.70443 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.17997 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 1.30002 | 1 |
transgenic ySAMdc/azygous control (red) | 1.37115 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98239 | 0.323 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0762 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86196 | 1 |
Manapal/WT (break) | 1.0686 | 1 |
Manapal/WT (red) | 0.91695 | 0.36 |
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