Expression of 1-1-8.4.18.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.836770.31
27DAP/17DAP1.782420.474
39DAP/27DAP0.788790.425
41DAP/39DAP1.021840.994
42DAP/41DAP0.911761
43DAP/42DAP1.095850.976
47DAP/43DAP1.294260.647
52DAP/47DAP0.776090.463
57DAP/52DAP0.936040.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.144140.116
17DAP/reference1.049880.248
27DAP/reference1.012510.909
39DAP/reference1.007870.8
41DAP/reference1.019510.667
42DAP/reference1.07190.084
43DAP/reference1.026560.73
47DAP/reference1.064030.136
52DAP/reference1.090090.272
57DAP/reference0.932590.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.878680.442
27DAP/17DAP1.089570.909
39DAP/27DAP1.433550.249
41DAP/39DAP1.086971
42DAP/41DAP1.199170.446
43DAP/42DAP0.937680.618
47DAP/43DAP1.050710.92
52DAP/47DAP1.097140.844
57DAP/52DAP0.923840.584
57DAP/7DAP0.92461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.000341
17DAP/reference1.130880.399
27DAP/reference0.953230.375
39DAP/reference0.931610.264
41DAP/reference0.97540.489
42DAP/reference0.975120.482
43DAP/reference0.962130.368
47DAP/reference0.971080.504
52DAP/reference1.119380.098
57DAP/reference1.112870.536

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137870.203
17DAP/reference1.089910.036
27DAP/reference1.058350.618
39DAP/reference1.068440.514
41DAP/reference1.063330.573
42DAP/reference1.011441
43DAP/reference1.1640.219
47DAP/reference0.965920.311
52DAP/reference1.085180.085
57DAP/reference1.123360.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954950.391
17DAP/reference1.04160.657
27DAP/reference1.007661
39DAP/reference1.093540.613
41DAP/reference1.107680.168
42DAP/reference0.930710.445
43DAP/reference1.044190.712
47DAP/reference1.003761
52DAP/reference0.884250.277
57DAP/reference0.814510.035

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.971321
26DAP/20DAP0.866191
34DAP/26DAP1.155840.819
51DAP/34DAP0.901970.64
52DAP/51DAP0.798011
53DAP/52DAP1.22330.171
55DAP/53DAP1.09730.696
57DAP/55DAP1.434720.559
62DAP/57DAP1.098860.767
68DAP/62DAP0.816050.641
68DAP/14DAP0.960961

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.16921

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.322620.287
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.967461
Ripe Pepper/Ripe Tomato2.627781
Mature Eggplant/Ripe Tomato1.512221

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.007281
1-1-2/M821.026871
12-2/M820.986810.955
12-4/M820.97035
1-3/M820.940970.501
2-1-1/M821.102360.689
2-1/M821.005011
2-6/M821.031391
3-2/M821.00722
4-1-1/M820.962761
4-1/M820.99143
4-3-2/M821.07276
4-3/M820.9331
5-3/M820.992691
6-2/M820.963221
6-3/M821.002321
7-1/M821.00293
7-2/M820.976640.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.8184
IL2-6/WTpooled1.151460.788
IL7-5/WTpooled0.57235
IL7-3/WTpooled0.982681
IL12-4/WTpooled0.99051
IL1-4/WTpooled1.09048
WT/WTpooled1.089010.911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.044750.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.066251
DC3000/delta hrp 24h1.017490.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.361361
Exp 36h2.976680.489
Exp 60h0.93030.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.957321
Var 0h1.141470.936
Var 12h I row2-row10.939780.856
Var 12h NI row2-row10.75260.546
Var 36h I row2-row10.755191
Var 36h NI row2-row11.592111
Var 60h I row2-row11.015581
Var 60h NI row2-row12.131580.904
Time course 0hI-0hNI1.358740.833
Time course 12hI-12hNI1.092510.85
Time course 36hI-36hNI0.77390.091
Time course 60hI-60hNI0.704430.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.179970.863
transgenic ySAMdc/azygous control (breaker)1.300021
transgenic ySAMdc/azygous control (red)1.371150.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.982390.323

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.07621

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.861961
Manapal/WT (break)1.06861
Manapal/WT (red)0.916950.36