Expression of 1-1-8.4.18.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08195 | 0.838 |
27DAP/17DAP | 1.31 | 0.742 |
39DAP/27DAP | 0.85132 | 0.462 |
41DAP/39DAP | 1.84258 | 0.203 |
42DAP/41DAP | 1.07704 | 1 |
43DAP/42DAP | 1.01842 | 1 |
47DAP/43DAP | 1.03431 | 0.95 |
52DAP/47DAP | 1.06973 | 0.873 |
57DAP/52DAP | 1.06193 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03799 | 0.9 |
17DAP/reference | 1.02109 | 0.653 |
27DAP/reference | 1.05908 | 0.384 |
39DAP/reference | 1.02227 | 0.639 |
41DAP/reference | 1.08496 | 0.102 |
42DAP/reference | 0.90605 | 0.025 |
43DAP/reference | 0.9732 | 0.653 |
47DAP/reference | 0.93906 | 0.148 |
52DAP/reference | 0.81933 | 0.04 |
57DAP/reference | 0.84459 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98716 | 0.763 |
27DAP/17DAP | 0.98655 | 0.854 |
39DAP/27DAP | 1.04943 | 0.532 |
41DAP/39DAP | 1.02686 | 0.883 |
42DAP/41DAP | 1.00159 | 0.929 |
43DAP/42DAP | 1.01684 | 0.699 |
47DAP/43DAP | 1.02512 | 0.788 |
52DAP/47DAP | 1.05342 | 0.8 |
57DAP/52DAP | 1.0504 | 0.662 |
57DAP/7DAP | 1.05646 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.909 | 0.146 |
17DAP/reference | 0.91476 | 0.049 |
27DAP/reference | 0.82041 | 0.01 |
39DAP/reference | 0.98049 | 0.552 |
41DAP/reference | 0.92943 | 0.086 |
42DAP/reference | 0.83362 | 0.021 |
43DAP/reference | 0.80644 | 0.012 |
47DAP/reference | 0.77882 | 0.035 |
52DAP/reference | 0.85825 | 0.027 |
57DAP/reference | 0.8819 | 0.03 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05559 | 0.265 |
17DAP/reference | 0.96855 | 0.399 |
27DAP/reference | 0.9437 | 0.34 |
39DAP/reference | 0.85254 | 0.071 |
41DAP/reference | 0.85797 | 0.145 |
42DAP/reference | 0.90032 | 0.035 |
43DAP/reference | 1.00194 | 0.831 |
47DAP/reference | 0.95353 | 0.184 |
52DAP/reference | 1.07293 | 0.092 |
57DAP/reference | 1.2078 | 0.193 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91465 | 0.098 |
17DAP/reference | 0.89171 | 0.186 |
27DAP/reference | 0.82716 | 0.031 |
39DAP/reference | 0.81344 | 0.01 |
41DAP/reference | 0.85288 | 0.027 |
42DAP/reference | 0.72507 | 0.028 |
43DAP/reference | 0.83708 | 0.084 |
47DAP/reference | 0.89121 | 0.12 |
52DAP/reference | 0.75923 | 0.15 |
57DAP/reference | 0.55006 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02341 | 0.966 |
26DAP/20DAP | 0.91667 | 0.317 |
34DAP/26DAP | 1.03188 | 1 |
51DAP/34DAP | 0.95297 | 0.598 |
52DAP/51DAP | 1.02707 | 0.776 |
53DAP/52DAP | 1.00935 | 0.935 |
55DAP/53DAP | 1.0044 | 1 |
57DAP/55DAP | 0.99692 | 0.944 |
62DAP/57DAP | 1.0615 | 1 |
68DAP/62DAP | 0.91086 | 0.579 |
68DAP/14DAP | 0.89669 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92752 | 0.175 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.5015 | |
Mature Green Tomato/Ripe Tomato | 0.89925 | 0.411 |
Immature Eggplant/Mature Eggplant | 2.35318 | 0.13 |
Ripe Pepper/Ripe Tomato | 1.61884 | 1 |
Mature Eggplant/Ripe Tomato | 1.51241 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0821 | 0.877 |
1-1-2/M82 | 1.12422 | 1 |
12-2/M82 | 1.18395 | 1 |
12-4/M82 | 0.96087 | 1 |
1-3/M82 | 0.80423 | 0.378 |
2-1-1/M82 | 1.15234 | |
2-1/M82 | 1.48286 | |
2-6/M82 | 1.00285 | 1 |
3-2/M82 | 0.93786 | 1 |
4-1-1/M82 | 0.93486 | 1 |
4-1/M82 | 0.91671 | 1 |
4-3-2/M82 | 0.96744 | 0.698 |
4-3/M82 | 0.67572 | 0.611 |
5-3/M82 | 0.98574 | 1 |
6-2/M82 | 0.95504 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.03871 | 0.87 |
7-2/M82 | 0.88375 | 0.881 |
9-3-2/M82 | 0.8797 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.89674 | 0.247 |
IL2-6/WTpooled | 1.13421 | 0.788 |
IL7-5/WTpooled | 0.84108 | 1 |
IL7-3/WTpooled | 1.15295 | 1 |
IL12-4/WTpooled | 1.14613 | 0.839 |
IL1-4/WTpooled | 1.03606 | 1 |
WT/WTpooled | 0.97471 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9798 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82942 | 0.839 |
DC3000/delta hrp 6h | 0.74728 | |
DC3000/delta hrp 12h | 1.12118 | 1 |
DC3000/delta hrp 24h | 1.1139 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95545 | 0.513 |
DC3000 delta B/DC3000 delta AB | 0.98207 | 0.916 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05145 | 1 |
Exp 36h | 1.50823 | 0.693 |
Exp 60h | 1.42834 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02089 | 1 |
Var 0h | 1.02426 | 1 |
Var 12h I row2-row1 | 0.98302 | 0.948 |
Var 12h NI row2-row1 | 0.96754 | 0.713 |
Var 36h I row2-row1 | 0.76657 | 0.805 |
Var 36h NI row2-row1 | 1.11305 | 0.246 |
Var 60h I row2-row1 | 1.25396 | 1 |
Var 60h NI row2-row1 | 1.20033 | 0.904 |
Time course 0hI-0hNI | 1.08163 | 0.486 |
Time course 12hI-12hNI | 1.00125 | 1 |
Time course 36hI-36hNI | 0.89139 | 0.065 |
Time course 60hI-60hNI | 0.89735 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.3435 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 0.83017 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.31957 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95666 | 0.089 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.829 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.45249 | 0.14 |
Manapal/WT (break) | 1.78939 | 0.13 |
Manapal/WT (red) | 0.74302 | 0.199 |
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