Expression of 1-1-8.4.18.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.081950.838
27DAP/17DAP1.310.742
39DAP/27DAP0.851320.462
41DAP/39DAP1.842580.203
42DAP/41DAP1.077041
43DAP/42DAP1.018421
47DAP/43DAP1.034310.95
52DAP/47DAP1.069730.873
57DAP/52DAP1.061931

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.037990.9
17DAP/reference1.021090.653
27DAP/reference1.059080.384
39DAP/reference1.022270.639
41DAP/reference1.084960.102
42DAP/reference0.906050.025
43DAP/reference0.97320.653
47DAP/reference0.939060.148
52DAP/reference0.819330.04
57DAP/reference0.844590.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.987160.763
27DAP/17DAP0.986550.854
39DAP/27DAP1.049430.532
41DAP/39DAP1.026860.883
42DAP/41DAP1.001590.929
43DAP/42DAP1.016840.699
47DAP/43DAP1.025120.788
52DAP/47DAP1.053420.8
57DAP/52DAP1.05040.662
57DAP/7DAP1.056461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.9090.146
17DAP/reference0.914760.049
27DAP/reference0.820410.01
39DAP/reference0.980490.552
41DAP/reference0.929430.086
42DAP/reference0.833620.021
43DAP/reference0.806440.012
47DAP/reference0.778820.035
52DAP/reference0.858250.027
57DAP/reference0.88190.03

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055590.265
17DAP/reference0.968550.399
27DAP/reference0.94370.34
39DAP/reference0.852540.071
41DAP/reference0.857970.145
42DAP/reference0.900320.035
43DAP/reference1.001940.831
47DAP/reference0.953530.184
52DAP/reference1.072930.092
57DAP/reference1.20780.193

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914650.098
17DAP/reference0.891710.186
27DAP/reference0.827160.031
39DAP/reference0.813440.01
41DAP/reference0.852880.027
42DAP/reference0.725070.028
43DAP/reference0.837080.084
47DAP/reference0.891210.12
52DAP/reference0.759230.15
57DAP/reference0.550060.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.023410.966
26DAP/20DAP0.916670.317
34DAP/26DAP1.031881
51DAP/34DAP0.952970.598
52DAP/51DAP1.027070.776
53DAP/52DAP1.009350.935
55DAP/53DAP1.00441
57DAP/55DAP0.996920.944
62DAP/57DAP1.06151
68DAP/62DAP0.910860.579
68DAP/14DAP0.896691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.927520.175

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.5015
Mature Green Tomato/Ripe Tomato0.899250.411
Immature Eggplant/Mature Eggplant2.353180.13
Ripe Pepper/Ripe Tomato1.618841
Mature Eggplant/Ripe Tomato1.51241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.08210.877
1-1-2/M821.124221
12-2/M821.183951
12-4/M820.960871
1-3/M820.804230.378
2-1-1/M821.15234
2-1/M821.48286
2-6/M821.002851
3-2/M820.937861
4-1-1/M820.934861
4-1/M820.916711
4-3-2/M820.967440.698
4-3/M820.675720.611
5-3/M820.985741
6-2/M820.95504
6-3/M82N/AN/A
7-1/M821.038710.87
7-2/M820.883750.881
9-3-2/M820.87970.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.896740.247
IL2-6/WTpooled1.134210.788
IL7-5/WTpooled0.841081
IL7-3/WTpooled1.152951
IL12-4/WTpooled1.146130.839
IL1-4/WTpooled1.036061
WT/WTpooled0.974711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.97981

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.829420.839
DC3000/delta hrp 6h0.74728
DC3000/delta hrp 12h1.121181
DC3000/delta hrp 24h1.11390.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.955450.513
DC3000 delta B/DC3000 delta AB0.982070.916

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.051451
Exp 36h1.508230.693
Exp 60h1.428340.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020891
Var 0h1.024261
Var 12h I row2-row10.983020.948
Var 12h NI row2-row10.967540.713
Var 36h I row2-row10.766570.805
Var 36h NI row2-row11.113050.246
Var 60h I row2-row11.253961
Var 60h NI row2-row11.200330.904
Time course 0hI-0hNI1.081630.486
Time course 12hI-12hNI1.001251
Time course 36hI-36hNI0.891390.065
Time course 60hI-60hNI0.897350.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.34350.212
transgenic ySAMdc/azygous control (breaker)0.830170.15
transgenic ySAMdc/azygous control (red)1.319570.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.956660.089

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.8290.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.452490.14
Manapal/WT (break)1.789390.13
Manapal/WT (red)0.743020.199