Expression of 1-1-8.4.19.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.338470.291
27DAP/17DAP0.967990.945
39DAP/27DAP1.335760.693
41DAP/39DAP1.260030.584
42DAP/41DAP1.771920.086
43DAP/42DAP1.235630.885
47DAP/43DAP0.697980.185
52DAP/47DAP0.859540.6
57DAP/52DAP0.917120.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.513470.019
17DAP/reference1.280260.764
27DAP/reference1.512550.033
39DAP/reference1.4280.017
41DAP/reference1.481310.624
42DAP/reference1.156610.231
43DAP/reference1.56141
47DAP/reference1.088890.046
52DAP/reference2.072020.02
57DAP/reference0.720220.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.738290.154
27DAP/17DAP1.058320.905
39DAP/27DAP1.173420.541
41DAP/39DAP1.266770.087
42DAP/41DAP0.718310.034
43DAP/42DAP0.808190.024
47DAP/43DAP1.244490.681
52DAP/47DAP1.065310.907
57DAP/52DAP0.929960.622
57DAP/7DAP1.3520.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.83860.122
17DAP/reference0.771380.024
27DAP/reference1.204750.017
39DAP/reference0.85350.126
41DAP/reference0.919760.166
42DAP/reference1.024991
43DAP/reference0.756090.014
47DAP/reference1.034490.854
52DAP/reference0.776830.022
57DAP/reference0.884820.199

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036880.776
17DAP/reference1.24890.243
27DAP/reference1.178590.595
39DAP/reference1.437960.038
41DAP/reference0.992130.584
42DAP/reference1.153210.121
43DAP/reference1.366480.157
47DAP/reference1.144610.454
52DAP/reference1.383710.023
57DAP/reference1.278160.012

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.822380.112
17DAP/reference1.070.638
27DAP/reference0.910280.286
39DAP/reference0.841460.083
41DAP/reference1.060380.57
42DAP/reference1.166580.743
43DAP/reference0.971990.523
47DAP/reference1.127620.279
52DAP/reference4.208520.517
57DAP/reference0.929540.278

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.048381
26DAP/20DAP1.430760.132
34DAP/26DAP1.111041
51DAP/34DAP2.847750.032
52DAP/51DAP0.911141
53DAP/52DAP1.898430.022
55DAP/53DAP0.627250.017
57DAP/55DAP0.896730.479
62DAP/57DAP0.92150.871
68DAP/62DAP0.871730.7
68DAP/14DAP1.25828

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.80170.045

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.472020.021
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.46215
Mature Eggplant/Ripe Tomato0.818321

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.75125
1-1-2/M820.6865
12-2/M821.09181
12-4/M820.82641
1-3/M820.99734
2-1-1/M821.29134
2-1/M82N/AN/A
2-6/M821.24257
3-2/M821.0651
4-1-1/M82N/AN/A
4-1/M821.963170.466
4-3-2/M821.74156
4-3/M821.217941
5-3/M821.106761
6-2/M82N/AN/A
6-3/M820.89748
7-1/M821.174121
7-2/M821.36469
9-3-2/M822.947250.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.997281
IL2-6/WTpooled0.977221
IL7-5/WTpooled0.968211
IL7-3/WTpooled1.056971
IL12-4/WTpooled1.140460.737
IL1-4/WTpooled1.061071
WT/WTpooled1.060250.87

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.43650.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.034461
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.887841
DC3000/delta hrp 24h1.043360.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.38080.29
DC3000 delta B/DC3000 delta AB1.653480.151

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996421
Var 0h1.090550.936
Var 12h I row2-row11.042120.795
Var 12h NI row2-row11.483850.649
Var 36h I row2-row10.903941
Var 36h NI row2-row10.995710.852
Var 60h I row2-row10.536040.285
Var 60h NI row2-row10.772460.335
Time course 0hI-0hNI1.129150.833
Time course 12hI-12hNI1.503650.056
Time course 36hI-36hNI3.230130.004
Time course 60hI-60hNI28.36510.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.807530.082

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.877670.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.130511

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.425790.183
Manapal/WT (red)0.910160.607