Expression of 1-1-8.4.19.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.33847 | 0.291 |
27DAP/17DAP | 0.96799 | 0.945 |
39DAP/27DAP | 1.33576 | 0.693 |
41DAP/39DAP | 1.26003 | 0.584 |
42DAP/41DAP | 1.77192 | 0.086 |
43DAP/42DAP | 1.23563 | 0.885 |
47DAP/43DAP | 0.69798 | 0.185 |
52DAP/47DAP | 0.85954 | 0.6 |
57DAP/52DAP | 0.91712 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51347 | 0.019 |
17DAP/reference | 1.28026 | 0.764 |
27DAP/reference | 1.51255 | 0.033 |
39DAP/reference | 1.428 | 0.017 |
41DAP/reference | 1.48131 | 0.624 |
42DAP/reference | 1.15661 | 0.231 |
43DAP/reference | 1.56141 | |
47DAP/reference | 1.08889 | 0.046 |
52DAP/reference | 2.07202 | 0.02 |
57DAP/reference | 0.72022 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.73829 | 0.154 |
27DAP/17DAP | 1.05832 | 0.905 |
39DAP/27DAP | 1.17342 | 0.541 |
41DAP/39DAP | 1.26677 | 0.087 |
42DAP/41DAP | 0.71831 | 0.034 |
43DAP/42DAP | 0.80819 | 0.024 |
47DAP/43DAP | 1.24449 | 0.681 |
52DAP/47DAP | 1.06531 | 0.907 |
57DAP/52DAP | 0.92996 | 0.622 |
57DAP/7DAP | 1.352 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8386 | 0.122 |
17DAP/reference | 0.77138 | 0.024 |
27DAP/reference | 1.20475 | 0.017 |
39DAP/reference | 0.8535 | 0.126 |
41DAP/reference | 0.91976 | 0.166 |
42DAP/reference | 1.02499 | 1 |
43DAP/reference | 0.75609 | 0.014 |
47DAP/reference | 1.03449 | 0.854 |
52DAP/reference | 0.77683 | 0.022 |
57DAP/reference | 0.88482 | 0.199 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03688 | 0.776 |
17DAP/reference | 1.2489 | 0.243 |
27DAP/reference | 1.17859 | 0.595 |
39DAP/reference | 1.43796 | 0.038 |
41DAP/reference | 0.99213 | 0.584 |
42DAP/reference | 1.15321 | 0.121 |
43DAP/reference | 1.36648 | 0.157 |
47DAP/reference | 1.14461 | 0.454 |
52DAP/reference | 1.38371 | 0.023 |
57DAP/reference | 1.27816 | 0.012 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82238 | 0.112 |
17DAP/reference | 1.07 | 0.638 |
27DAP/reference | 0.91028 | 0.286 |
39DAP/reference | 0.84146 | 0.083 |
41DAP/reference | 1.06038 | 0.57 |
42DAP/reference | 1.16658 | 0.743 |
43DAP/reference | 0.97199 | 0.523 |
47DAP/reference | 1.12762 | 0.279 |
52DAP/reference | 4.20852 | 0.517 |
57DAP/reference | 0.92954 | 0.278 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04838 | 1 |
26DAP/20DAP | 1.43076 | 0.132 |
34DAP/26DAP | 1.11104 | 1 |
51DAP/34DAP | 2.84775 | 0.032 |
52DAP/51DAP | 0.91114 | 1 |
53DAP/52DAP | 1.89843 | 0.022 |
55DAP/53DAP | 0.62725 | 0.017 |
57DAP/55DAP | 0.89673 | 0.479 |
62DAP/57DAP | 0.9215 | 0.871 |
68DAP/62DAP | 0.87173 | 0.7 |
68DAP/14DAP | 1.25828 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.8017 | 0.045 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.47202 | 0.021 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.46215 | |
Mature Eggplant/Ripe Tomato | 0.81832 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75125 | |
1-1-2/M82 | 0.6865 | |
12-2/M82 | 1.09181 | |
12-4/M82 | 0.82641 | |
1-3/M82 | 0.99734 | |
2-1-1/M82 | 1.29134 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.24257 | |
3-2/M82 | 1.0651 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.96317 | 0.466 |
4-3-2/M82 | 1.74156 | |
4-3/M82 | 1.21794 | 1 |
5-3/M82 | 1.10676 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.89748 | |
7-1/M82 | 1.17412 | 1 |
7-2/M82 | 1.36469 | |
9-3-2/M82 | 2.94725 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99728 | 1 |
IL2-6/WTpooled | 0.97722 | 1 |
IL7-5/WTpooled | 0.96821 | 1 |
IL7-3/WTpooled | 1.05697 | 1 |
IL12-4/WTpooled | 1.14046 | 0.737 |
IL1-4/WTpooled | 1.06107 | 1 |
WT/WTpooled | 1.06025 | 0.87 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.4365 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03446 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.88784 | 1 |
DC3000/delta hrp 24h | 1.04336 | 0.779 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.3808 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.65348 | 0.151 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99642 | 1 |
Var 0h | 1.09055 | 0.936 |
Var 12h I row2-row1 | 1.04212 | 0.795 |
Var 12h NI row2-row1 | 1.48385 | 0.649 |
Var 36h I row2-row1 | 0.90394 | 1 |
Var 36h NI row2-row1 | 0.99571 | 0.852 |
Var 60h I row2-row1 | 0.53604 | 0.285 |
Var 60h NI row2-row1 | 0.77246 | 0.335 |
Time course 0hI-0hNI | 1.12915 | 0.833 |
Time course 12hI-12hNI | 1.50365 | 0.056 |
Time course 36hI-36hNI | 3.23013 | 0.004 |
Time course 60hI-60hNI | 28.3651 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.80753 | 0.082 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87767 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.13051 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.42579 | 0.183 |
Manapal/WT (red) | 0.91016 | 0.607 |
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