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Expression of 1-1-8.4.19.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.897120.475
27DAP/17DAP1.169880.841
39DAP/27DAP0.974440.733
41DAP/39DAP1.337320.442
42DAP/41DAP0.82840.774
43DAP/42DAP0.976520.918
47DAP/43DAP1.079560.542
52DAP/47DAP1.349830.438
57DAP/52DAP1.081220.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.000310.616
17DAP/reference1.138450.355
27DAP/reference1.238560.143
39DAP/reference1.17710.186
41DAP/reference1.266310.171
42DAP/reference1.266620.002
43DAP/reference1.139880.518
47DAP/reference1.188160.057
52DAP/reference1.483760.014
57DAP/reference1.273510.082

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.022790.934
27DAP/17DAP1.035070.912
39DAP/27DAP1.097410.499
41DAP/39DAP1.050160.868
42DAP/41DAP0.993390.865
43DAP/42DAP1.036630.478
47DAP/43DAP0.979530.902
52DAP/47DAP0.940070.575
57DAP/52DAP0.927930.424
57DAP/7DAP0.993621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.043950.664
17DAP/reference0.972720.124
27DAP/reference0.941270.012
39DAP/reference0.964340.146
41DAP/reference0.905520.028
42DAP/reference0.990290.582
43DAP/reference0.95680.22
47DAP/reference1.127360.345
52DAP/reference0.937510.09
57DAP/reference0.903970.027

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.086130.516
17DAP/reference1.508870.049
27DAP/reference1.319890.066
39DAP/reference1.13050.657
41DAP/reference1.154520.293
42DAP/reference1.46810.011
43DAP/reference0.998290.774
47DAP/reference1.151510.164
52DAP/reference1.052191
57DAP/reference1.219410.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.033250.827
17DAP/reference1.081380.376
27DAP/reference0.959950.195
39DAP/reference0.956770.092
41DAP/reference1.044250.796
42DAP/reference1.000891
43DAP/reference1.162950.285
47DAP/reference1.225880.171
52DAP/reference0.959220.596
57DAP/reference1.237810.428

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.377910.817
26DAP/20DAP0.879580.512
34DAP/26DAP1.058120.819
51DAP/34DAP1.011030.844
52DAP/51DAP1.036870.792
53DAP/52DAP1.029730.868
55DAP/53DAP1.043940.703
57DAP/55DAP0.991430.867
62DAP/57DAP0.889690.871
68DAP/62DAP0.735990.378
68DAP/14DAP0.781360.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.089810.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.561170.068
Mature Green Tomato/Ripe Tomato1.024551
Immature Eggplant/Mature Eggplant1.117390.321
Ripe Pepper/Ripe Tomato3.083221
Mature Eggplant/Ripe Tomato6.056930.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.959510.477
1-1-2/M821.068291
12-2/M820.891810.955
12-4/M821.0015N/A
1-3/M820.882940.378
2-1-1/M821.20489N/A
2-1/M821.122981
2-6/M821.00671
3-2/M820.92563N/A
4-1-1/M820.990611
4-1/M821.019841
4-3-2/M820.894880.487
4-3/M820.957730.611
5-3/M821.129281
6-2/M820.991541
6-3/M821.18855N/A
7-1/M820.996451
7-2/M821.047611
9-3-2/M820.93994N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.95912N/A
IL2-6/WTpooled1.138430.788
IL7-5/WTpooled1.618270.792
IL7-3/WTpooled0.914131
IL12-4/WTpooled1.474540.557
IL1-4/WTpooled1.150351
WT/WTpooled1.210071

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.809350.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.954621
DC3000/delta hrp 6h1.119191
DC3000/delta hrp 12h1.247371
DC3000/delta hrp 24h0.767980.163

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.979991
DC3000 delta B/DC3000 delta AB0.980050.892

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.97131
Exp 36h0.703570.406
Exp 60h0.952320.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987881
Var 0h0.92480.933
Var 12h I row2-row10.831370.338
Var 12h NI row2-row11.028971
Var 36h I row2-row11.077281
Var 36h NI row2-row10.772530.478
Var 60h I row2-row10.895820.832
Var 60h NI row2-row10.963690.932
Time course 0hI-0hNI0.979960.886
Time course 12hI-12hNI1.023110.811
Time course 36hI-36hNI0.944470.323
Time course 60hI-60hNI0.954150.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.822190.338
transgenic ySAMdc/azygous control (breaker)0.942331
transgenic ySAMdc/azygous control (red)0.917571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007630.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.192330.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.030331
Manapal/WT (break)0.814351
Manapal/WT (red)1.538070.222