Expression of 1-1-8.4.19.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89712 | 0.475 |
27DAP/17DAP | 1.16988 | 0.841 |
39DAP/27DAP | 0.97444 | 0.733 |
41DAP/39DAP | 1.33732 | 0.442 |
42DAP/41DAP | 0.8284 | 0.774 |
43DAP/42DAP | 0.97652 | 0.918 |
47DAP/43DAP | 1.07956 | 0.542 |
52DAP/47DAP | 1.34983 | 0.438 |
57DAP/52DAP | 1.08122 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00031 | 0.616 |
17DAP/reference | 1.13845 | 0.355 |
27DAP/reference | 1.23856 | 0.143 |
39DAP/reference | 1.1771 | 0.186 |
41DAP/reference | 1.26631 | 0.171 |
42DAP/reference | 1.26662 | 0.002 |
43DAP/reference | 1.13988 | 0.518 |
47DAP/reference | 1.18816 | 0.057 |
52DAP/reference | 1.48376 | 0.014 |
57DAP/reference | 1.27351 | 0.082 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02279 | 0.934 |
27DAP/17DAP | 1.03507 | 0.912 |
39DAP/27DAP | 1.09741 | 0.499 |
41DAP/39DAP | 1.05016 | 0.868 |
42DAP/41DAP | 0.99339 | 0.865 |
43DAP/42DAP | 1.03663 | 0.478 |
47DAP/43DAP | 0.97953 | 0.902 |
52DAP/47DAP | 0.94007 | 0.575 |
57DAP/52DAP | 0.92793 | 0.424 |
57DAP/7DAP | 0.99362 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04395 | 0.664 |
17DAP/reference | 0.97272 | 0.124 |
27DAP/reference | 0.94127 | 0.012 |
39DAP/reference | 0.96434 | 0.146 |
41DAP/reference | 0.90552 | 0.028 |
42DAP/reference | 0.99029 | 0.582 |
43DAP/reference | 0.9568 | 0.22 |
47DAP/reference | 1.12736 | 0.345 |
52DAP/reference | 0.93751 | 0.09 |
57DAP/reference | 0.90397 | 0.027 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08613 | 0.516 |
17DAP/reference | 1.50887 | 0.049 |
27DAP/reference | 1.31989 | 0.066 |
39DAP/reference | 1.1305 | 0.657 |
41DAP/reference | 1.15452 | 0.293 |
42DAP/reference | 1.4681 | 0.011 |
43DAP/reference | 0.99829 | 0.774 |
47DAP/reference | 1.15151 | 0.164 |
52DAP/reference | 1.05219 | 1 |
57DAP/reference | 1.21941 | 0.523 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03325 | 0.827 |
17DAP/reference | 1.08138 | 0.376 |
27DAP/reference | 0.95995 | 0.195 |
39DAP/reference | 0.95677 | 0.092 |
41DAP/reference | 1.04425 | 0.796 |
42DAP/reference | 1.00089 | 1 |
43DAP/reference | 1.16295 | 0.285 |
47DAP/reference | 1.22588 | 0.171 |
52DAP/reference | 0.95922 | 0.596 |
57DAP/reference | 1.23781 | 0.428 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.37791 | 0.817 |
26DAP/20DAP | 0.87958 | 0.512 |
34DAP/26DAP | 1.05812 | 0.819 |
51DAP/34DAP | 1.01103 | 0.844 |
52DAP/51DAP | 1.03687 | 0.792 |
53DAP/52DAP | 1.02973 | 0.868 |
55DAP/53DAP | 1.04394 | 0.703 |
57DAP/55DAP | 0.99143 | 0.867 |
62DAP/57DAP | 0.88969 | 0.871 |
68DAP/62DAP | 0.73599 | 0.378 |
68DAP/14DAP | 0.78136 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08981 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.56117 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.02455 | 1 |
Immature Eggplant/Mature Eggplant | 1.11739 | 0.321 |
Ripe Pepper/Ripe Tomato | 3.08322 | 1 |
Mature Eggplant/Ripe Tomato | 6.05693 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95951 | 0.477 |
1-1-2/M82 | 1.06829 | 1 |
12-2/M82 | 0.89181 | 0.955 |
12-4/M82 | 1.0015 | |
1-3/M82 | 0.88294 | 0.378 |
2-1-1/M82 | 1.20489 | |
2-1/M82 | 1.12298 | 1 |
2-6/M82 | 1.0067 | 1 |
3-2/M82 | 0.92563 | |
4-1-1/M82 | 0.99061 | 1 |
4-1/M82 | 1.01984 | 1 |
4-3-2/M82 | 0.89488 | 0.487 |
4-3/M82 | 0.95773 | 0.611 |
5-3/M82 | 1.12928 | 1 |
6-2/M82 | 0.99154 | 1 |
6-3/M82 | 1.18855 | |
7-1/M82 | 0.99645 | 1 |
7-2/M82 | 1.04761 | 1 |
9-3-2/M82 | 0.93994 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95912 | |
IL2-6/WTpooled | 1.13843 | 0.788 |
IL7-5/WTpooled | 1.61827 | 0.792 |
IL7-3/WTpooled | 0.91413 | 1 |
IL12-4/WTpooled | 1.47454 | 0.557 |
IL1-4/WTpooled | 1.15035 | 1 |
WT/WTpooled | 1.21007 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.80935 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95462 | 1 |
DC3000/delta hrp 6h | 1.11919 | 1 |
DC3000/delta hrp 12h | 1.24737 | 1 |
DC3000/delta hrp 24h | 0.76798 | 0.163 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.97999 | 1 |
DC3000 delta B/DC3000 delta AB | 0.98005 | 0.892 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9713 | 1 |
Exp 36h | 0.70357 | 0.406 |
Exp 60h | 0.95232 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98788 | 1 |
Var 0h | 0.9248 | 0.933 |
Var 12h I row2-row1 | 0.83137 | 0.338 |
Var 12h NI row2-row1 | 1.02897 | 1 |
Var 36h I row2-row1 | 1.07728 | 1 |
Var 36h NI row2-row1 | 0.77253 | 0.478 |
Var 60h I row2-row1 | 0.89582 | 0.832 |
Var 60h NI row2-row1 | 0.96369 | 0.932 |
Time course 0hI-0hNI | 0.97996 | 0.886 |
Time course 12hI-12hNI | 1.02311 | 0.811 |
Time course 36hI-36hNI | 0.94447 | 0.323 |
Time course 60hI-60hNI | 0.95415 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.82219 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 0.94233 | 1 |
transgenic ySAMdc/azygous control (red) | 0.91757 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00763 | 0.958 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19233 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03033 | 1 |
Manapal/WT (break) | 0.81435 | 1 |
Manapal/WT (red) | 1.53807 | 0.222 |
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