Expression of 1-1-8.4.19.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.049910.786
27DAP/17DAP1.214070.783
39DAP/27DAP0.93570.549
41DAP/39DAP1.5280.392
42DAP/41DAP0.935751
43DAP/42DAP0.913340.55
47DAP/43DAP0.976470.879
52DAP/47DAP1.12090.724
57DAP/52DAP1.039450.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.222330.052
17DAP/reference1.049960.108
27DAP/reference1.056740.221
39DAP/reference1.077160.203
41DAP/reference1.114390.036
42DAP/reference1.166590.001
43DAP/reference1.029480.812
47DAP/reference1.109910.039
52DAP/reference1.269570.013
57DAP/reference1.080820.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.988190.763
27DAP/17DAP1.001431
39DAP/27DAP0.989340.932
41DAP/39DAP1.033970.774
42DAP/41DAP1.011090.947
43DAP/42DAP1.007840.664
47DAP/43DAP1.068290.822
52DAP/47DAP0.998610.979
57DAP/52DAP0.991030.813
57DAP/7DAP1.023361

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.264510.189
17DAP/reference1.21880.009
27DAP/reference1.309750.06
39DAP/reference1.29645
41DAP/reference1.091960.141
42DAP/reference1.030590.534
43DAP/reference1.153740.022
47DAP/reference0.992511
52DAP/reference0.961910.477
57DAP/reference1.057120.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.089820.325
17DAP/reference1.170590.037
27DAP/reference1.158410.116
39DAP/reference1.118250.316
41DAP/reference1.212610.072
42DAP/reference1.131910.094
43DAP/reference1.194480.119
47DAP/reference1.045330.366
52DAP/reference1.201690.021
57DAP/reference1.233720.039

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.091920.32
17DAP/reference1.07010.412
27DAP/reference1.139540.045
39DAP/reference1.133410.019
41DAP/reference1.162070.174
42DAP/reference1.178770.044
43DAP/reference1.259330.029
47DAP/reference1.073770.171
52DAP/reference1.115950.369
57DAP/reference0.978410.509

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.005540.966
26DAP/20DAP1.004861
34DAP/26DAP0.965860.945
51DAP/34DAP0.97590.785
52DAP/51DAP1.01520.915
53DAP/52DAP0.979620.917
55DAP/53DAP1.019090.982
57DAP/55DAP0.997790.968
62DAP/57DAP1.024610.868
68DAP/62DAP0.858030.543
68DAP/14DAP0.951911

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.971890.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.065171
Mature Green Tomato/Ripe Tomato1.005510.898
Immature Eggplant/Mature Eggplant1.361730.065
Ripe Pepper/Ripe Tomato2.859540.258
Mature Eggplant/Ripe Tomato2.33074

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.980380.961
1-1-2/M820.970051
12-2/M820.976880.955
12-4/M820.915241
1-3/M821.018861
2-1-1/M821.016521
2-1/M821.041841
2-6/M820.974971
3-2/M820.97123
4-1-1/M821.050251
4-1/M821.128011
4-3-2/M821.000611
4-3/M820.945180.72
5-3/M820.988191
6-2/M820.993861
6-3/M820.994231
7-1/M821.002441
7-2/M821.033771
9-3-2/M820.947970.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.263280.277
IL2-6/WTpooled0.713970.473
IL7-5/WTpooled0.753531
IL7-3/WTpooled1.694541
IL12-4/WTpooled1.167810.595
IL1-4/WTpooled1.163811
WT/WTpooled1.110381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.142560.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036070.921
DC3000/delta hrp 6h0.632660.95
DC3000/delta hrp 12h1.010181
DC3000/delta hrp 24h1.038850.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.294710.044
DC3000 delta B/DC3000 delta AB1.203890.159

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.891760.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013641
Var 0h1.090890.936
Var 12h I row2-row11.144360.406
Var 12h NI row2-row11.053051
Var 36h I row2-row11.033171
Var 36h NI row2-row10.833280.584
Var 60h I row2-row10.655930.832
Var 60h NI row2-row11.065821
Time course 0hI-0hNI1.048960.867
Time course 12hI-12hNI1.018830.842
Time course 36hI-36hNI0.999260.811
Time course 60hI-60hNI1.630370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.05041
transgenic ySAMdc/azygous control (breaker)1.233081
transgenic ySAMdc/azygous control (red)1.328950.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.920080.256

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.752670.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.285430.307
Manapal/WT (break)0.874461
Manapal/WT (red)0.638270.242