Expression of 1-1-8.4.19.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04991 | 0.786 |
27DAP/17DAP | 1.21407 | 0.783 |
39DAP/27DAP | 0.9357 | 0.549 |
41DAP/39DAP | 1.528 | 0.392 |
42DAP/41DAP | 0.93575 | 1 |
43DAP/42DAP | 0.91334 | 0.55 |
47DAP/43DAP | 0.97647 | 0.879 |
52DAP/47DAP | 1.1209 | 0.724 |
57DAP/52DAP | 1.03945 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22233 | 0.052 |
17DAP/reference | 1.04996 | 0.108 |
27DAP/reference | 1.05674 | 0.221 |
39DAP/reference | 1.07716 | 0.203 |
41DAP/reference | 1.11439 | 0.036 |
42DAP/reference | 1.16659 | 0.001 |
43DAP/reference | 1.02948 | 0.812 |
47DAP/reference | 1.10991 | 0.039 |
52DAP/reference | 1.26957 | 0.013 |
57DAP/reference | 1.08082 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98819 | 0.763 |
27DAP/17DAP | 1.00143 | 1 |
39DAP/27DAP | 0.98934 | 0.932 |
41DAP/39DAP | 1.03397 | 0.774 |
42DAP/41DAP | 1.01109 | 0.947 |
43DAP/42DAP | 1.00784 | 0.664 |
47DAP/43DAP | 1.06829 | 0.822 |
52DAP/47DAP | 0.99861 | 0.979 |
57DAP/52DAP | 0.99103 | 0.813 |
57DAP/7DAP | 1.02336 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26451 | 0.189 |
17DAP/reference | 1.2188 | 0.009 |
27DAP/reference | 1.30975 | 0.06 |
39DAP/reference | 1.29645 | |
41DAP/reference | 1.09196 | 0.141 |
42DAP/reference | 1.03059 | 0.534 |
43DAP/reference | 1.15374 | 0.022 |
47DAP/reference | 0.99251 | 1 |
52DAP/reference | 0.96191 | 0.477 |
57DAP/reference | 1.05712 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08982 | 0.325 |
17DAP/reference | 1.17059 | 0.037 |
27DAP/reference | 1.15841 | 0.116 |
39DAP/reference | 1.11825 | 0.316 |
41DAP/reference | 1.21261 | 0.072 |
42DAP/reference | 1.13191 | 0.094 |
43DAP/reference | 1.19448 | 0.119 |
47DAP/reference | 1.04533 | 0.366 |
52DAP/reference | 1.20169 | 0.021 |
57DAP/reference | 1.23372 | 0.039 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09192 | 0.32 |
17DAP/reference | 1.0701 | 0.412 |
27DAP/reference | 1.13954 | 0.045 |
39DAP/reference | 1.13341 | 0.019 |
41DAP/reference | 1.16207 | 0.174 |
42DAP/reference | 1.17877 | 0.044 |
43DAP/reference | 1.25933 | 0.029 |
47DAP/reference | 1.07377 | 0.171 |
52DAP/reference | 1.11595 | 0.369 |
57DAP/reference | 0.97841 | 0.509 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00554 | 0.966 |
26DAP/20DAP | 1.00486 | 1 |
34DAP/26DAP | 0.96586 | 0.945 |
51DAP/34DAP | 0.9759 | 0.785 |
52DAP/51DAP | 1.0152 | 0.915 |
53DAP/52DAP | 0.97962 | 0.917 |
55DAP/53DAP | 1.01909 | 0.982 |
57DAP/55DAP | 0.99779 | 0.968 |
62DAP/57DAP | 1.02461 | 0.868 |
68DAP/62DAP | 0.85803 | 0.543 |
68DAP/14DAP | 0.95191 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97189 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.06517 | 1 |
Mature Green Tomato/Ripe Tomato | 1.00551 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.36173 | 0.065 |
Ripe Pepper/Ripe Tomato | 2.85954 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.33074 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98038 | 0.961 |
1-1-2/M82 | 0.97005 | 1 |
12-2/M82 | 0.97688 | 0.955 |
12-4/M82 | 0.91524 | 1 |
1-3/M82 | 1.01886 | 1 |
2-1-1/M82 | 1.01652 | 1 |
2-1/M82 | 1.04184 | 1 |
2-6/M82 | 0.97497 | 1 |
3-2/M82 | 0.97123 | |
4-1-1/M82 | 1.05025 | 1 |
4-1/M82 | 1.12801 | 1 |
4-3-2/M82 | 1.00061 | 1 |
4-3/M82 | 0.94518 | 0.72 |
5-3/M82 | 0.98819 | 1 |
6-2/M82 | 0.99386 | 1 |
6-3/M82 | 0.99423 | 1 |
7-1/M82 | 1.00244 | 1 |
7-2/M82 | 1.03377 | 1 |
9-3-2/M82 | 0.94797 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.26328 | 0.277 |
IL2-6/WTpooled | 0.71397 | 0.473 |
IL7-5/WTpooled | 0.75353 | 1 |
IL7-3/WTpooled | 1.69454 | 1 |
IL12-4/WTpooled | 1.16781 | 0.595 |
IL1-4/WTpooled | 1.16381 | 1 |
WT/WTpooled | 1.11038 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14256 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03607 | 0.921 |
DC3000/delta hrp 6h | 0.63266 | 0.95 |
DC3000/delta hrp 12h | 1.01018 | 1 |
DC3000/delta hrp 24h | 1.03885 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29471 | 0.044 |
DC3000 delta B/DC3000 delta AB | 1.20389 | 0.159 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.89176 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01364 | 1 |
Var 0h | 1.09089 | 0.936 |
Var 12h I row2-row1 | 1.14436 | 0.406 |
Var 12h NI row2-row1 | 1.05305 | 1 |
Var 36h I row2-row1 | 1.03317 | 1 |
Var 36h NI row2-row1 | 0.83328 | 0.584 |
Var 60h I row2-row1 | 0.65593 | 0.832 |
Var 60h NI row2-row1 | 1.06582 | 1 |
Time course 0hI-0hNI | 1.04896 | 0.867 |
Time course 12hI-12hNI | 1.01883 | 0.842 |
Time course 36hI-36hNI | 0.99926 | 0.811 |
Time course 60hI-60hNI | 1.63037 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0504 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.23308 | 1 |
transgenic ySAMdc/azygous control (red) | 1.32895 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92008 | 0.256 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75267 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.28543 | 0.307 |
Manapal/WT (break) | 0.87446 | 1 |
Manapal/WT (red) | 0.63827 | 0.242 |
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