Expression of 1-1-8.4.19.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.074760.975
27DAP/17DAP1.108670.877
39DAP/27DAP1.092841
41DAP/39DAP1.0740.96
42DAP/41DAP1.388980.527
43DAP/42DAP1.01010.937
47DAP/43DAP0.672690.105
52DAP/47DAP1.019170.916
57DAP/52DAP1.065510.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.555660.007
17DAP/reference1.943130.018
27DAP/reference1.466350.008
39DAP/reference1.500050.423
41DAP/reference2.48660.007
42DAP/reference1.311950.166
43DAP/reference1.45112
47DAP/reference0.921410.392
52DAP/reference1.982710.062
57DAP/reference0.40081

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.467630.196
27DAP/17DAP0.994690.943
39DAP/27DAP0.808280.087
41DAP/39DAP1.235610.247
42DAP/41DAP0.931660.545
43DAP/42DAP1.263570.212
47DAP/43DAP1.006930.983
52DAP/47DAP1.096960.724
57DAP/52DAP1.304510.188
57DAP/7DAP1.132381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.098570.83
17DAP/reference1.110020.361
27DAP/reference0.988640.571
39DAP/reference0.849050.126
41DAP/reference0.939590.326
42DAP/reference0.976830.582
43DAP/reference0.952880.368
47DAP/reference1.179850.44
52DAP/reference0.865030.035
57DAP/reference0.985550.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.33570.052
17DAP/reference1.513210.014
27DAP/reference1.22370.153
39DAP/reference1.298650.043
41DAP/reference1.304780.029
42DAP/reference1.238670.059
43DAP/reference1.348160.327
47DAP/reference1.283790.015
52DAP/reference1.509530.009
57DAP/reference1.541870.015

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.156080.185
17DAP/reference1.132370.657
27DAP/reference1.045110.749
39DAP/reference0.909740.122
41DAP/reference1.031581
42DAP/reference0.978440.671
43DAP/reference1.14730.432
47DAP/reference1.210330.251
52DAP/reference0.985760.747
57DAP/reference0.749750.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.996831
26DAP/20DAP1.161920.504
34DAP/26DAP1.20811
51DAP/34DAP1.191820.207
52DAP/51DAP0.973641
53DAP/52DAP1.049680.944
55DAP/53DAP1.058010.737
57DAP/55DAP1.255540.424
62DAP/57DAP1.059691
68DAP/62DAP0.960950.81
68DAP/14DAP0.801270.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.904560.627

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.229160.077
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.09771
Mature Eggplant/Ripe Tomato2.066310.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.295660.877
1-1-2/M821.107960.977
12-2/M820.6864
12-4/M821.00996
1-3/M82N/AN/A
2-1-1/M820.7405
2-1/M820.83324
2-6/M82N/AN/A
3-2/M821.71207
4-1-1/M821.62079
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.415690.268
5-3/M820.927591
6-2/M821.57245
6-3/M820.81141
7-1/M821.215731
7-2/M821.98502
9-3-2/M821.745810.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.360830.277
IL2-6/WTpooled1.422160.419
IL7-5/WTpooled1.829090.541
IL7-3/WTpooled1.197871
IL12-4/WTpooled1.43030.516
IL1-4/WTpooled1.113570.426
WT/WTpooled1.080051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.881960.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.103610.25
DC3000/delta hrp 6h8.63386
DC3000/delta hrp 12h1.138461
DC3000/delta hrp 24h0.54490.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.846490.093
DC3000 delta B/DC3000 delta AB0.85060.142

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.921241
Exp 36hN/AN/A
Exp 60h1.153480.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.990241
Var 0h1.154490.274
Var 12h I row2-row10.943630.353
Var 12h NI row2-row11.010011
Var 36h I row2-row10.960521
Var 36h NI row2-row10.978520.852
Var 60h I row2-row10.891760.582
Var 60h NI row2-row11.145940.904
Time course 0hI-0hNI1.040520.867
Time course 12hI-12hNI0.924350.284
Time course 36hI-36hNI0.948640.323
Time course 60hI-60hNI0.661470.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.995220.931
transgenic ySAMdc/azygous control (breaker)0.965131
transgenic ySAMdc/azygous control (red)1.023331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.919840.14

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.758660.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.330670.413