Expression of 1-1-8.4.19.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.912090.586
27DAP/17DAP1.025841
39DAP/27DAP1.064861
41DAP/39DAP1.376840.788
42DAP/41DAP1.148021
43DAP/42DAP1.192710.985
47DAP/43DAP0.80720.416
52DAP/47DAP0.960390.856
57DAP/52DAP0.924910.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.435410.011
17DAP/reference1.667980.013
27DAP/reference1.466990.009
39DAP/reference1.798810.027
41DAP/reference1.409590.855
42DAP/reference1.006730.645
43DAP/reference1.37924
47DAP/reference0.997280.602
52DAP/reference1.505810.121
57DAP/reference0.895470.58

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.175290.201
27DAP/17DAP0.822810.508
39DAP/27DAP1.299660.15
41DAP/39DAP0.980140.986
42DAP/41DAP1.064650.935
43DAP/42DAP1.96040.013
47DAP/43DAP0.861770.156
52DAP/47DAP0.954180.801
57DAP/52DAP1.218660.325
57DAP/7DAP1.529450.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.972410.495
17DAP/reference0.992520.599
27DAP/reference1.068320.804
39DAP/reference0.824410.126
41DAP/reference1.308420.109
42DAP/reference0.949230.393
43DAP/reference1.022461
47DAP/reference1.087641
52DAP/reference1.078910.563
57DAP/reference0.804380.047

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942940.58
17DAP/reference1.189670.375
27DAP/reference1.229240.437
39DAP/reference1.264830.077
41DAP/reference1.118350.459
42DAP/reference1.435530.011
43DAP/reference1.588110.097
47DAP/reference1.349270.008
52DAP/reference1.623310.006
57DAP/reference1.328930.236

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.949970.391
17DAP/reference1.05220.887
27DAP/reference0.936140.416
39DAP/reference0.994910.755
41DAP/reference1.173270.502
42DAP/reference1.089620.5
43DAP/reference1.2920.121
47DAP/reference1.282560.089
52DAP/reference0.847160.242
57DAP/reference1.309210.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.946921
26DAP/20DAP0.94470.512
34DAP/26DAP1.013581
51DAP/34DAP1.131480.746
52DAP/51DAP1.289650.06
53DAP/52DAP1.013021
55DAP/53DAP1.090760.537
57DAP/55DAP0.956310.774
62DAP/57DAP0.900550.681
68DAP/62DAP0.929090.787
68DAP/14DAP1.02968

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.536180.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.798070.226
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.27173
Mature Eggplant/Ripe Tomato0.5059

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.113620.877
1-1-2/M820.9140.958
12-2/M821.136970.61
12-4/M821.13861
1-3/M820.7610.378
2-1-1/M821.22354
2-1/M821.11545
2-6/M820.881851
3-2/M821.09523
4-1-1/M820.803740.962
4-1/M821.44527
4-3-2/M820.871630.698
4-3/M820.800230.396
5-3/M821.029161
6-2/M820.8287
6-3/M82N/AN/A
7-1/M821.061161
7-2/M820.879250.57
9-3-2/M820.74601

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.25023
IL7-5/WTpooled1.25612
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.71051
IL1-4/WTpooled1.120421
WT/WTpooled2.44685

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.944190.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.0160.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.03771
DC3000/delta hrp 24h0.982590.924

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.875780.46
DC3000 delta B/DC3000 delta AB1.057220.601

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.92190.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988691
Var 0h0.941771
Var 12h I row2-row10.955330.856
Var 12h NI row2-row10.914370.546
Var 36h I row2-row10.826280.805
Var 36h NI row2-row10.958450.706
Var 60h I row2-row11.099280.543
Var 60h NI row2-row10.978621
Time course 0hI-0hNI1.022030.867
Time course 12hI-12hNI0.993831
Time course 36hI-36hNI0.879470.142
Time course 60hI-60hNI0.799170.015

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.989741
transgenic ySAMdc/azygous control (red)0.885341

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.937830.06

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.922310.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.065811
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.870240.274