Expression of 1-1-8.4.19.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91209 | 0.586 |
27DAP/17DAP | 1.02584 | 1 |
39DAP/27DAP | 1.06486 | 1 |
41DAP/39DAP | 1.37684 | 0.788 |
42DAP/41DAP | 1.14802 | 1 |
43DAP/42DAP | 1.19271 | 0.985 |
47DAP/43DAP | 0.8072 | 0.416 |
52DAP/47DAP | 0.96039 | 0.856 |
57DAP/52DAP | 0.92491 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43541 | 0.011 |
17DAP/reference | 1.66798 | 0.013 |
27DAP/reference | 1.46699 | 0.009 |
39DAP/reference | 1.79881 | 0.027 |
41DAP/reference | 1.40959 | 0.855 |
42DAP/reference | 1.00673 | 0.645 |
43DAP/reference | 1.37924 | |
47DAP/reference | 0.99728 | 0.602 |
52DAP/reference | 1.50581 | 0.121 |
57DAP/reference | 0.89547 | 0.58 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17529 | 0.201 |
27DAP/17DAP | 0.82281 | 0.508 |
39DAP/27DAP | 1.29966 | 0.15 |
41DAP/39DAP | 0.98014 | 0.986 |
42DAP/41DAP | 1.06465 | 0.935 |
43DAP/42DAP | 1.9604 | 0.013 |
47DAP/43DAP | 0.86177 | 0.156 |
52DAP/47DAP | 0.95418 | 0.801 |
57DAP/52DAP | 1.21866 | 0.325 |
57DAP/7DAP | 1.52945 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97241 | 0.495 |
17DAP/reference | 0.99252 | 0.599 |
27DAP/reference | 1.06832 | 0.804 |
39DAP/reference | 0.82441 | 0.126 |
41DAP/reference | 1.30842 | 0.109 |
42DAP/reference | 0.94923 | 0.393 |
43DAP/reference | 1.02246 | 1 |
47DAP/reference | 1.08764 | 1 |
52DAP/reference | 1.07891 | 0.563 |
57DAP/reference | 0.80438 | 0.047 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94294 | 0.58 |
17DAP/reference | 1.18967 | 0.375 |
27DAP/reference | 1.22924 | 0.437 |
39DAP/reference | 1.26483 | 0.077 |
41DAP/reference | 1.11835 | 0.459 |
42DAP/reference | 1.43553 | 0.011 |
43DAP/reference | 1.58811 | 0.097 |
47DAP/reference | 1.34927 | 0.008 |
52DAP/reference | 1.62331 | 0.006 |
57DAP/reference | 1.32893 | 0.236 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94997 | 0.391 |
17DAP/reference | 1.0522 | 0.887 |
27DAP/reference | 0.93614 | 0.416 |
39DAP/reference | 0.99491 | 0.755 |
41DAP/reference | 1.17327 | 0.502 |
42DAP/reference | 1.08962 | 0.5 |
43DAP/reference | 1.292 | 0.121 |
47DAP/reference | 1.28256 | 0.089 |
52DAP/reference | 0.84716 | 0.242 |
57DAP/reference | 1.30921 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94692 | 1 |
26DAP/20DAP | 0.9447 | 0.512 |
34DAP/26DAP | 1.01358 | 1 |
51DAP/34DAP | 1.13148 | 0.746 |
52DAP/51DAP | 1.28965 | 0.06 |
53DAP/52DAP | 1.01302 | 1 |
55DAP/53DAP | 1.09076 | 0.537 |
57DAP/55DAP | 0.95631 | 0.774 |
62DAP/57DAP | 0.90055 | 0.681 |
68DAP/62DAP | 0.92909 | 0.787 |
68DAP/14DAP | 1.02968 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.53618 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.79807 | 0.226 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.27173 | |
Mature Eggplant/Ripe Tomato | 0.5059 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11362 | 0.877 |
1-1-2/M82 | 0.914 | 0.958 |
12-2/M82 | 1.13697 | 0.61 |
12-4/M82 | 1.13861 | |
1-3/M82 | 0.761 | 0.378 |
2-1-1/M82 | 1.22354 | |
2-1/M82 | 1.11545 | |
2-6/M82 | 0.88185 | 1 |
3-2/M82 | 1.09523 | |
4-1-1/M82 | 0.80374 | 0.962 |
4-1/M82 | 1.44527 | |
4-3-2/M82 | 0.87163 | 0.698 |
4-3/M82 | 0.80023 | 0.396 |
5-3/M82 | 1.02916 | 1 |
6-2/M82 | 0.8287 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.06116 | 1 |
7-2/M82 | 0.87925 | 0.57 |
9-3-2/M82 | 0.74601 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.25023 | |
IL7-5/WTpooled | 1.25612 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.71051 | |
IL1-4/WTpooled | 1.12042 | 1 |
WT/WTpooled | 2.44685 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94419 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.016 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.0377 | 1 |
DC3000/delta hrp 24h | 0.98259 | 0.924 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.87578 | 0.46 |
DC3000 delta B/DC3000 delta AB | 1.05722 | 0.601 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.9219 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98869 | 1 |
Var 0h | 0.94177 | 1 |
Var 12h I row2-row1 | 0.95533 | 0.856 |
Var 12h NI row2-row1 | 0.91437 | 0.546 |
Var 36h I row2-row1 | 0.82628 | 0.805 |
Var 36h NI row2-row1 | 0.95845 | 0.706 |
Var 60h I row2-row1 | 1.09928 | 0.543 |
Var 60h NI row2-row1 | 0.97862 | 1 |
Time course 0hI-0hNI | 1.02203 | 0.867 |
Time course 12hI-12hNI | 0.99383 | 1 |
Time course 36hI-36hNI | 0.87947 | 0.142 |
Time course 60hI-60hNI | 0.79917 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.98974 | 1 |
transgenic ySAMdc/azygous control (red) | 0.88534 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93783 | 0.06 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92231 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.06581 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.87024 | 0.274 |
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