Expression of 1-1-8.4.2.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.777870.098
27DAP/17DAP0.735270.216
39DAP/27DAP0.909130.544
41DAP/39DAP0.867390.483
42DAP/41DAP1.185650.752
43DAP/42DAP1.02481
47DAP/43DAP1.028460.979
52DAP/47DAP1.10610.776
57DAP/52DAP1.137010.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.400060.022
17DAP/reference1.207750.053
27DAP/reference1.16160.435
39DAP/reference1.260780.191
41DAP/reference1.12730.759
42DAP/reference1.108850.544
43DAP/reference1.135860.812
47DAP/reference1.302820.004
52DAP/reference1.847680.011
57DAP/reference1.836550.021

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.734610.135
27DAP/17DAP1.208080.403
39DAP/27DAP0.858090.167
41DAP/39DAP0.800650.31
42DAP/41DAP1.004720.926
43DAP/42DAP1.045660.699
47DAP/43DAP0.891820.078
52DAP/47DAP0.998560.97
57DAP/52DAP0.876850.356
57DAP/7DAP0.762820.186

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96660.27
17DAP/reference0.997940.693
27DAP/reference0.938860.03
39DAP/reference0.955450.018
41DAP/reference0.906950.146
42DAP/reference0.787960.01
43DAP/reference0.96770.48
47DAP/reference1.333750.254
52DAP/reference0.829230.09
57DAP/reference1.001330.748

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.235750.057
17DAP/reference2.070260.278
27DAP/reference1.041690.619
39DAP/reference1.170090.463
41DAP/reference1.266980.248
42DAP/reference1.43590.074
43DAP/reference1.27530.128
47DAP/reference1.229710.098
52DAP/reference1.148811
57DAP/reference1.084950.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076140.138
17DAP/reference1.117370.212
27DAP/reference0.980950.49
39DAP/reference1.008780.912
41DAP/reference0.974840.371
42DAP/reference1.110090.692
43DAP/reference1.28230.202
47DAP/reference1.184140.704
52DAP/reference1.071550.779
57DAP/reference1.560220.062

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.309250.43
26DAP/20DAP1.323180.124
34DAP/26DAP1.08990.819
51DAP/34DAP1.014210.98
52DAP/51DAP0.97641
53DAP/52DAP0.750240.063
55DAP/53DAP0.928520.188
57DAP/55DAP1.237750.764
62DAP/57DAP1.071
68DAP/62DAP0.962870.885
68DAP/14DAP1.216491

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.842830.198

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.025380.898
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato7.723541
Mature Eggplant/Ripe Tomato16.86810.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.065291
1-1-2/M820.976690.958
12-2/M821.01981
12-4/M821.092950.611
1-3/M820.929480.501
2-1-1/M821.214920.764
2-1/M821.124441
2-6/M821.009851
3-2/M821.002041
4-1-1/M820.869041
4-1/M821.033081
4-3-2/M820.860880.698
4-3/M820.99271
5-3/M821.034841
6-2/M820.919621
6-3/M821.035721
7-1/M820.879411
7-2/M821.125021
9-3-2/M820.8356

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.835540.321
IL2-6/WTpooled1.16236
IL7-5/WTpooled0.798461
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.541120.71
IL1-4/WTpooled0.901760.444
WT/WTpooled0.959751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.846910.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.020640.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.020791
DC3000/delta hrp 24h0.83440.14

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.601570.03
DC3000 delta B/DC3000 delta AB0.699620.121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.003961
Exp 36hN/AN/A
Exp 60h1.094181

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02321
Var 0h0.710491
Var 12h I row2-row11.207920.473
Var 12h NI row2-row10.979211
Var 36h I row2-row10.91431
Var 36h NI row2-row11.203561
Var 60h I row2-row10.94680.832
Var 60h NI row2-row11.284170.691
Time course 0hI-0hNI0.956310.721
Time course 12hI-12hNI1.014430.885
Time course 36hI-36hNI0.940820.202
Time course 60hI-60hNI1.077230.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.977450.614
transgenic ySAMdc/azygous control (breaker)1.001251
transgenic ySAMdc/azygous control (red)0.815061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.935080.095

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.055070.307
Manapal/WT (break)0.904281
Manapal/WT (red)1.237851