Expression of 1-1-8.4.2.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77787 | 0.098 |
27DAP/17DAP | 0.73527 | 0.216 |
39DAP/27DAP | 0.90913 | 0.544 |
41DAP/39DAP | 0.86739 | 0.483 |
42DAP/41DAP | 1.18565 | 0.752 |
43DAP/42DAP | 1.0248 | 1 |
47DAP/43DAP | 1.02846 | 0.979 |
52DAP/47DAP | 1.1061 | 0.776 |
57DAP/52DAP | 1.13701 | 0.908 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40006 | 0.022 |
17DAP/reference | 1.20775 | 0.053 |
27DAP/reference | 1.1616 | 0.435 |
39DAP/reference | 1.26078 | 0.191 |
41DAP/reference | 1.1273 | 0.759 |
42DAP/reference | 1.10885 | 0.544 |
43DAP/reference | 1.13586 | 0.812 |
47DAP/reference | 1.30282 | 0.004 |
52DAP/reference | 1.84768 | 0.011 |
57DAP/reference | 1.83655 | 0.021 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73461 | 0.135 |
27DAP/17DAP | 1.20808 | 0.403 |
39DAP/27DAP | 0.85809 | 0.167 |
41DAP/39DAP | 0.80065 | 0.31 |
42DAP/41DAP | 1.00472 | 0.926 |
43DAP/42DAP | 1.04566 | 0.699 |
47DAP/43DAP | 0.89182 | 0.078 |
52DAP/47DAP | 0.99856 | 0.97 |
57DAP/52DAP | 0.87685 | 0.356 |
57DAP/7DAP | 0.76282 | 0.186 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9666 | 0.27 |
17DAP/reference | 0.99794 | 0.693 |
27DAP/reference | 0.93886 | 0.03 |
39DAP/reference | 0.95545 | 0.018 |
41DAP/reference | 0.90695 | 0.146 |
42DAP/reference | 0.78796 | 0.01 |
43DAP/reference | 0.9677 | 0.48 |
47DAP/reference | 1.33375 | 0.254 |
52DAP/reference | 0.82923 | 0.09 |
57DAP/reference | 1.00133 | 0.748 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23575 | 0.057 |
17DAP/reference | 2.07026 | 0.278 |
27DAP/reference | 1.04169 | 0.619 |
39DAP/reference | 1.17009 | 0.463 |
41DAP/reference | 1.26698 | 0.248 |
42DAP/reference | 1.4359 | 0.074 |
43DAP/reference | 1.2753 | 0.128 |
47DAP/reference | 1.22971 | 0.098 |
52DAP/reference | 1.14881 | 1 |
57DAP/reference | 1.08495 | 0.523 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07614 | 0.138 |
17DAP/reference | 1.11737 | 0.212 |
27DAP/reference | 0.98095 | 0.49 |
39DAP/reference | 1.00878 | 0.912 |
41DAP/reference | 0.97484 | 0.371 |
42DAP/reference | 1.11009 | 0.692 |
43DAP/reference | 1.2823 | 0.202 |
47DAP/reference | 1.18414 | 0.704 |
52DAP/reference | 1.07155 | 0.779 |
57DAP/reference | 1.56022 | 0.062 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.30925 | 0.43 |
26DAP/20DAP | 1.32318 | 0.124 |
34DAP/26DAP | 1.0899 | 0.819 |
51DAP/34DAP | 1.01421 | 0.98 |
52DAP/51DAP | 0.9764 | 1 |
53DAP/52DAP | 0.75024 | 0.063 |
55DAP/53DAP | 0.92852 | 0.188 |
57DAP/55DAP | 1.23775 | 0.764 |
62DAP/57DAP | 1.07 | 1 |
68DAP/62DAP | 0.96287 | 0.885 |
68DAP/14DAP | 1.21649 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84283 | 0.198 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.02538 | 0.898 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 7.72354 | 1 |
Mature Eggplant/Ripe Tomato | 16.8681 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06529 | 1 |
1-1-2/M82 | 0.97669 | 0.958 |
12-2/M82 | 1.0198 | 1 |
12-4/M82 | 1.09295 | 0.611 |
1-3/M82 | 0.92948 | 0.501 |
2-1-1/M82 | 1.21492 | 0.764 |
2-1/M82 | 1.12444 | 1 |
2-6/M82 | 1.00985 | 1 |
3-2/M82 | 1.00204 | 1 |
4-1-1/M82 | 0.86904 | 1 |
4-1/M82 | 1.03308 | 1 |
4-3-2/M82 | 0.86088 | 0.698 |
4-3/M82 | 0.9927 | 1 |
5-3/M82 | 1.03484 | 1 |
6-2/M82 | 0.91962 | 1 |
6-3/M82 | 1.03572 | 1 |
7-1/M82 | 0.87941 | 1 |
7-2/M82 | 1.12502 | 1 |
9-3-2/M82 | 0.8356 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.83554 | 0.321 |
IL2-6/WTpooled | 1.16236 | |
IL7-5/WTpooled | 0.79846 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.54112 | 0.71 |
IL1-4/WTpooled | 0.90176 | 0.444 |
WT/WTpooled | 0.95975 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84691 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02064 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.02079 | 1 |
DC3000/delta hrp 24h | 0.8344 | 0.14 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.60157 | 0.03 |
DC3000 delta B/DC3000 delta AB | 0.69962 | 0.121 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00396 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.09418 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0232 | 1 |
Var 0h | 0.71049 | 1 |
Var 12h I row2-row1 | 1.20792 | 0.473 |
Var 12h NI row2-row1 | 0.97921 | 1 |
Var 36h I row2-row1 | 0.9143 | 1 |
Var 36h NI row2-row1 | 1.20356 | 1 |
Var 60h I row2-row1 | 0.9468 | 0.832 |
Var 60h NI row2-row1 | 1.28417 | 0.691 |
Time course 0hI-0hNI | 0.95631 | 0.721 |
Time course 12hI-12hNI | 1.01443 | 0.885 |
Time course 36hI-36hNI | 0.94082 | 0.202 |
Time course 60hI-60hNI | 1.07723 | 0.426 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.97745 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.00125 | 1 |
transgenic ySAMdc/azygous control (red) | 0.81506 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.93508 | 0.095 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05507 | 0.307 |
Manapal/WT (break) | 0.90428 | 1 |
Manapal/WT (red) | 1.23785 | 1 |
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