Expression of 1-1-8.4.20.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8342 | 0.364 |
27DAP/17DAP | 1.17285 | 0.859 |
39DAP/27DAP | 0.84514 | 0.462 |
41DAP/39DAP | 1.99665 | 0.295 |
42DAP/41DAP | 0.91197 | 1 |
43DAP/42DAP | 0.92743 | 0.874 |
47DAP/43DAP | 0.89038 | 0.625 |
52DAP/47DAP | 1.05716 | 0.869 |
57DAP/52DAP | 1.04164 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95257 | 0.513 |
17DAP/reference | 0.79277 | 0.011 |
27DAP/reference | 0.98715 | 0.763 |
39DAP/reference | 0.81481 | 0.023 |
41DAP/reference | 0.66495 | 0.008 |
42DAP/reference | 0.98514 | 0.413 |
43DAP/reference | 0.87032 | 0.113 |
47DAP/reference | 1.04027 | 1 |
52DAP/reference | 1.54332 | 0.027 |
57DAP/reference | 1.51179 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.38843 | 0.642 |
27DAP/17DAP | 1.06421 | 0.951 |
39DAP/27DAP | 0.88309 | 0.444 |
41DAP/39DAP | 1.0792 | 0.876 |
42DAP/41DAP | 0.75853 | 0.099 |
43DAP/42DAP | 1.49402 | 0.122 |
47DAP/43DAP | 1.10801 | 0.914 |
52DAP/47DAP | 1.0483 | 0.868 |
57DAP/52DAP | 1.28001 | 0.089 |
57DAP/7DAP | 1.21116 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15758 | 0.197 |
17DAP/reference | 1.04588 | 0.574 |
27DAP/reference | 1.15559 | 0.371 |
39DAP/reference | 1.09211 | 0.511 |
41DAP/reference | 0.9501 | 0.375 |
42DAP/reference | 1.05944 | 0.534 |
43DAP/reference | 1.26385 | 0.024 |
47DAP/reference | 1.02246 | 1 |
52DAP/reference | 1.01553 | 0.802 |
57DAP/reference | 1.20966 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83089 | 0.053 |
17DAP/reference | 0.81265 | 0.021 |
27DAP/reference | 0.9846 | 0.576 |
39DAP/reference | 1.20288 | 0.335 |
41DAP/reference | 1.18987 | 0.162 |
42DAP/reference | 1.10122 | 0.274 |
43DAP/reference | 0.76839 | 0.058 |
47DAP/reference | 0.88664 | 0.09 |
52DAP/reference | 1.22733 | 0.057 |
57DAP/reference | 0.74411 | 0.02 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95577 | 0.422 |
17DAP/reference | 0.99474 | 0.792 |
27DAP/reference | 1.06429 | 0.408 |
39DAP/reference | 1.10064 | 0.342 |
41DAP/reference | 1.08321 | 0.222 |
42DAP/reference | 1.20356 | 0.382 |
43DAP/reference | 1.30777 | 0.28 |
47DAP/reference | 0.93159 | 0.24 |
52DAP/reference | 1.17609 | 0.262 |
57DAP/reference | 2.39104 | 0.025 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23717 | 0.735 |
26DAP/20DAP | 0.92341 | 0.512 |
34DAP/26DAP | 1.32603 | 0.542 |
51DAP/34DAP | 0.94554 | 0.727 |
52DAP/51DAP | 1.11166 | 0.51 |
53DAP/52DAP | 0.92728 | 0.715 |
55DAP/53DAP | 1.01004 | 0.876 |
57DAP/55DAP | 1.26585 | 0.793 |
62DAP/57DAP | 0.94894 | 0.681 |
68DAP/62DAP | 1.43372 | 0.145 |
68DAP/14DAP | 2.35622 | 0.024 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96982 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.41601 | 0.078 |
Mature Green Tomato/Ripe Tomato | 0.84801 | 0.119 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 4.05319 | 1 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | 1.07063 | |
12-4/M82 | 0.94992 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.05107 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.80504 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.96159 | 1 |
4-3-2/M82 | 0.75846 | 0.698 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.88149 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.05795 | |
7-2/M82 | 0.81556 | 0.881 |
9-3-2/M82 | 1.10635 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.68934 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.02231 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01831 | 0.921 |
DC3000/delta hrp 6h | 0.96951 | |
DC3000/delta hrp 12h | 1.09252 | 1 |
DC3000/delta hrp 24h | 0.96426 | 0.782 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.9425 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96425 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.8489 | 0.705 |
Var 12h NI row2-row1 | 0.92904 | 0.141 |
Var 36h I row2-row1 | 1.04083 | 1 |
Var 36h NI row2-row1 | 0.86703 | |
Var 60h I row2-row1 | 0.91674 | 0.952 |
Var 60h NI row2-row1 | 1.03742 | 1 |
Time course 0hI-0hNI | 0.86327 | 0.384 |
Time course 12hI-12hNI | 0.9697 | 0.855 |
Time course 36hI-36hNI | 0.85858 | 0.274 |
Time course 60hI-60hNI | 3.28815 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09405 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 0.89945 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.21461 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94615 | 0.263 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8885 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.13238 | 1 |
Manapal/WT (break) | 0.95081 | 1 |
Manapal/WT (red) | 0.8703 | 0.607 |
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