Expression of 1-1-8.4.20.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.83420.364
27DAP/17DAP1.172850.859
39DAP/27DAP0.845140.462
41DAP/39DAP1.996650.295
42DAP/41DAP0.911971
43DAP/42DAP0.927430.874
47DAP/43DAP0.890380.625
52DAP/47DAP1.057160.869
57DAP/52DAP1.041641

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.952570.513
17DAP/reference0.792770.011
27DAP/reference0.987150.763
39DAP/reference0.814810.023
41DAP/reference0.664950.008
42DAP/reference0.985140.413
43DAP/reference0.870320.113
47DAP/reference1.040271
52DAP/reference1.543320.027
57DAP/reference1.511790.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.388430.642
27DAP/17DAP1.064210.951
39DAP/27DAP0.883090.444
41DAP/39DAP1.07920.876
42DAP/41DAP0.758530.099
43DAP/42DAP1.494020.122
47DAP/43DAP1.108010.914
52DAP/47DAP1.04830.868
57DAP/52DAP1.280010.089
57DAP/7DAP1.211161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.157580.197
17DAP/reference1.045880.574
27DAP/reference1.155590.371
39DAP/reference1.092110.511
41DAP/reference0.95010.375
42DAP/reference1.059440.534
43DAP/reference1.263850.024
47DAP/reference1.022461
52DAP/reference1.015530.802
57DAP/reference1.209660.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.830890.053
17DAP/reference0.812650.021
27DAP/reference0.98460.576
39DAP/reference1.202880.335
41DAP/reference1.189870.162
42DAP/reference1.101220.274
43DAP/reference0.768390.058
47DAP/reference0.886640.09
52DAP/reference1.227330.057
57DAP/reference0.744110.02

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.955770.422
17DAP/reference0.994740.792
27DAP/reference1.064290.408
39DAP/reference1.100640.342
41DAP/reference1.083210.222
42DAP/reference1.203560.382
43DAP/reference1.307770.28
47DAP/reference0.931590.24
52DAP/reference1.176090.262
57DAP/reference2.391040.025

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.237170.735
26DAP/20DAP0.923410.512
34DAP/26DAP1.326030.542
51DAP/34DAP0.945540.727
52DAP/51DAP1.111660.51
53DAP/52DAP0.927280.715
55DAP/53DAP1.010040.876
57DAP/55DAP1.265850.793
62DAP/57DAP0.948940.681
68DAP/62DAP1.433720.145
68DAP/14DAP2.356220.024

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.969820.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.416010.078
Mature Green Tomato/Ripe Tomato0.848010.119
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato4.053191
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M821.07063
12-4/M820.949921
1-3/M82N/AN/A
2-1-1/M821.051071
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.805041
4-1-1/M82N/AN/A
4-1/M820.961591
4-3-2/M820.758460.698
4-3/M82N/AN/A
5-3/M820.881491
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.05795
7-2/M820.815560.881
9-3-2/M821.106351

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.68934
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.02231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.018310.921
DC3000/delta hrp 6h0.96951
DC3000/delta hrp 12h1.092521
DC3000/delta hrp 24h0.964260.782

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.94250.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964251
Var 0hN/AN/A
Var 12h I row2-row10.84890.705
Var 12h NI row2-row10.929040.141
Var 36h I row2-row11.040831
Var 36h NI row2-row10.86703
Var 60h I row2-row10.916740.952
Var 60h NI row2-row11.037421
Time course 0hI-0hNI0.863270.384
Time course 12hI-12hNI0.96970.855
Time course 36hI-36hNI0.858580.274
Time course 60hI-60hNI3.288150.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.094050.699
transgenic ySAMdc/azygous control (breaker)0.899450.49
transgenic ySAMdc/azygous control (red)1.214610.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.946150.263

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.88850.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.132381
Manapal/WT (break)0.950811
Manapal/WT (red)0.87030.607