Expression of 1-1-8.4.20.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.11661 | 0.183 |
27DAP/17DAP | 1.10687 | 0.872 |
39DAP/27DAP | 0.89371 | 0.62 |
41DAP/39DAP | 0.93012 | 0.824 |
42DAP/41DAP | 1.08206 | 0.974 |
43DAP/42DAP | 1.00432 | 0.937 |
47DAP/43DAP | 1.03828 | 0.966 |
52DAP/47DAP | 1.05416 | 0.96 |
57DAP/52DAP | 1.60668 | 0.894 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01031 | 1 |
17DAP/reference | 1.00242 | 1 |
27DAP/reference | 1.06139 | 0.306 |
39DAP/reference | 0.9206 | 0.306 |
41DAP/reference | 0.97 | 0.667 |
42DAP/reference | 0.92915 | 0.04 |
43DAP/reference | 1.00738 | 0.982 |
47DAP/reference | 0.91999 | 0.077 |
52DAP/reference | 0.86492 | 0.049 |
57DAP/reference | 0.79171 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02136 | 0.785 |
27DAP/17DAP | 0.95639 | 0.684 |
39DAP/27DAP | 1.05564 | 0.541 |
41DAP/39DAP | 1.05522 | 0.801 |
42DAP/41DAP | 0.99983 | 0.926 |
43DAP/42DAP | 0.95991 | 0.503 |
47DAP/43DAP | 1.02289 | 0.901 |
52DAP/47DAP | 1.01623 | 0.939 |
57DAP/52DAP | 1.04734 | 0.67 |
57DAP/7DAP | 1.12948 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36246 | 0.049 |
17DAP/reference | 1.6449 | 0.01 |
27DAP/reference | 1.41674 | 0.008 |
39DAP/reference | 1.89067 | 0.005 |
41DAP/reference | 1.58178 | 0.024 |
42DAP/reference | 1.85413 | 0.006 |
43DAP/reference | 1.94804 | 0.007 |
47DAP/reference | 1.30236 | 0.458 |
52DAP/reference | 1.63847 | 0.007 |
57DAP/reference | 1.57648 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99915 | 0.951 |
17DAP/reference | 0.94923 | 0.253 |
27DAP/reference | 0.82048 | 0.069 |
39DAP/reference | 0.89454 | 0.25 |
41DAP/reference | 0.82596 | 0.034 |
42DAP/reference | 0.88619 | 0.042 |
43DAP/reference | 0.93239 | 0.352 |
47DAP/reference | 0.89363 | 0.053 |
52DAP/reference | 0.94326 | 0.101 |
57DAP/reference | 0.9757 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35013 | 0.026 |
17DAP/reference | 1.20657 | 0.427 |
27DAP/reference | 1.92383 | 0.02 |
39DAP/reference | 1.76064 | 0.01 |
41DAP/reference | 1.62466 | 0.022 |
42DAP/reference | 1.53244 | 0.114 |
43DAP/reference | 1.5222 | 0.121 |
47DAP/reference | 0.95725 | 0.383 |
52DAP/reference | 1.67717 | 0.088 |
57DAP/reference | 0.9938 | 0.416 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0773 | 0.966 |
26DAP/20DAP | 0.95041 | 1 |
34DAP/26DAP | 0.96161 | 0.848 |
51DAP/34DAP | 0.88451 | 0.213 |
52DAP/51DAP | 0.99399 | 1 |
53DAP/52DAP | 0.99399 | 0.978 |
55DAP/53DAP | 1.05578 | 0.741 |
57DAP/55DAP | 0.94867 | 0.748 |
62DAP/57DAP | 1.27488 | 0.303 |
68DAP/62DAP | 1.05679 | 0.962 |
68DAP/14DAP | 0.89422 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94547 | 0.378 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.24171 | 0.075 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.97072 | 1 |
Ripe Pepper/Ripe Tomato | 0.77574 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.75024 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99572 | 1 |
1-1-2/M82 | 0.97456 | 1 |
12-2/M82 | 0.96171 | 0.955 |
12-4/M82 | 0.99298 | |
1-3/M82 | 0.9857 | 1 |
2-1-1/M82 | 1.20629 | 0.439 |
2-1/M82 | 1.09129 | 1 |
2-6/M82 | 0.91248 | 1 |
3-2/M82 | 0.97759 | |
4-1-1/M82 | 1.1303 | 1 |
4-1/M82 | 1.01359 | |
4-3-2/M82 | 1.17212 | |
4-3/M82 | 1.01383 | 1 |
5-3/M82 | 0.99667 | 1 |
6-2/M82 | 0.99421 | 1 |
6-3/M82 | 0.97964 | 1 |
7-1/M82 | 1.0527 | 0.87 |
7-2/M82 | 0.96017 | 0.599 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.11969 | 0.277 |
IL2-6/WTpooled | 1.13705 | 0.46 |
IL7-5/WTpooled | 1.32379 | 1 |
IL7-3/WTpooled | 1.0264 | 1 |
IL12-4/WTpooled | 1.29697 | 0.52 |
IL1-4/WTpooled | 1.0416 | 1 |
WT/WTpooled | 1.09586 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10151 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0519 | 0.921 |
DC3000/delta hrp 6h | 1.26878 | 1 |
DC3000/delta hrp 12h | 1.53465 | 1 |
DC3000/delta hrp 24h | 1.13641 | 0.212 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.23114 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.11141 | 0.345 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1573 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.71968 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01022 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.18131 | 0.348 |
Var 12h NI row2-row1 | 1.04936 | 1 |
Var 36h I row2-row1 | 0.97665 | 1 |
Var 36h NI row2-row1 | 0.80558 | 0.522 |
Var 60h I row2-row1 | 0.7237 | 0.483 |
Var 60h NI row2-row1 | 1.11946 | 0.904 |
Time course 0hI-0hNI | 1.05384 | 0.852 |
Time course 12hI-12hNI | 1.02955 | 0.824 |
Time course 36hI-36hNI | 1.02469 | 0.651 |
Time course 60hI-60hNI | 1.84355 | 0.029 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00268 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.69432 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.8397 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00355 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.84726 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92382 | 1 |
Manapal/WT (break) | 0.44046 | 0.255 |
Manapal/WT (red) | 0.38568 | 0.181 |
|
|