Expression of 1-1-8.4.20.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.116610.183
27DAP/17DAP1.106870.872
39DAP/27DAP0.893710.62
41DAP/39DAP0.930120.824
42DAP/41DAP1.082060.974
43DAP/42DAP1.004320.937
47DAP/43DAP1.038280.966
52DAP/47DAP1.054160.96
57DAP/52DAP1.606680.894

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.010311
17DAP/reference1.002421
27DAP/reference1.061390.306
39DAP/reference0.92060.306
41DAP/reference0.970.667
42DAP/reference0.929150.04
43DAP/reference1.007380.982
47DAP/reference0.919990.077
52DAP/reference0.864920.049
57DAP/reference0.791710.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.021360.785
27DAP/17DAP0.956390.684
39DAP/27DAP1.055640.541
41DAP/39DAP1.055220.801
42DAP/41DAP0.999830.926
43DAP/42DAP0.959910.503
47DAP/43DAP1.022890.901
52DAP/47DAP1.016230.939
57DAP/52DAP1.047340.67
57DAP/7DAP1.129480.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.362460.049
17DAP/reference1.64490.01
27DAP/reference1.416740.008
39DAP/reference1.890670.005
41DAP/reference1.581780.024
42DAP/reference1.854130.006
43DAP/reference1.948040.007
47DAP/reference1.302360.458
52DAP/reference1.638470.007
57DAP/reference1.576480.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999150.951
17DAP/reference0.949230.253
27DAP/reference0.820480.069
39DAP/reference0.894540.25
41DAP/reference0.825960.034
42DAP/reference0.886190.042
43DAP/reference0.932390.352
47DAP/reference0.893630.053
52DAP/reference0.943260.101
57DAP/reference0.97570.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.350130.026
17DAP/reference1.206570.427
27DAP/reference1.923830.02
39DAP/reference1.760640.01
41DAP/reference1.624660.022
42DAP/reference1.532440.114
43DAP/reference1.52220.121
47DAP/reference0.957250.383
52DAP/reference1.677170.088
57DAP/reference0.99380.416

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.07730.966
26DAP/20DAP0.950411
34DAP/26DAP0.961610.848
51DAP/34DAP0.884510.213
52DAP/51DAP0.993991
53DAP/52DAP0.993990.978
55DAP/53DAP1.055780.741
57DAP/55DAP0.948670.748
62DAP/57DAP1.274880.303
68DAP/62DAP1.056790.962
68DAP/14DAP0.894221

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.945470.378

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.241710.075
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.970721
Ripe Pepper/Ripe Tomato0.775740.293
Mature Eggplant/Ripe Tomato0.750241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.995721
1-1-2/M820.974561
12-2/M820.961710.955
12-4/M820.99298
1-3/M820.98571
2-1-1/M821.206290.439
2-1/M821.091291
2-6/M820.912481
3-2/M820.97759
4-1-1/M821.13031
4-1/M821.01359
4-3-2/M821.17212
4-3/M821.013831
5-3/M820.996671
6-2/M820.994211
6-3/M820.979641
7-1/M821.05270.87
7-2/M820.960170.599
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.119690.277
IL2-6/WTpooled1.137050.46
IL7-5/WTpooled1.323791
IL7-3/WTpooled1.02641
IL12-4/WTpooled1.296970.52
IL1-4/WTpooled1.04161
WT/WTpooled1.095861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.101510.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.05190.921
DC3000/delta hrp 6h1.268781
DC3000/delta hrp 12h1.534651
DC3000/delta hrp 24h1.136410.212

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.231140.042
DC3000 delta B/DC3000 delta AB1.111410.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.15731
Exp 36hN/AN/A
Exp 60h1.719680.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.010221
Var 0hN/AN/A
Var 12h I row2-row11.181310.348
Var 12h NI row2-row11.049361
Var 36h I row2-row10.976651
Var 36h NI row2-row10.805580.522
Var 60h I row2-row10.72370.483
Var 60h NI row2-row11.119460.904
Time course 0hI-0hNI1.053840.852
Time course 12hI-12hNI1.029550.824
Time course 36hI-36hNI1.024690.651
Time course 60hI-60hNI1.843550.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.002681
transgenic ySAMdc/azygous control (breaker)0.694320.173
transgenic ySAMdc/azygous control (red)0.83971

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.003550.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.847260.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.923821
Manapal/WT (break)0.440460.255
Manapal/WT (red)0.385680.181