Expression of 1-1-8.4.3.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07392 | 0.67 |
27DAP/17DAP | 1.03107 | 1 |
39DAP/27DAP | 1.22798 | 0.804 |
41DAP/39DAP | 1.13958 | 0.569 |
42DAP/41DAP | 1.13079 | 0.863 |
43DAP/42DAP | 1.00041 | 0.937 |
47DAP/43DAP | 1.28055 | 0.223 |
52DAP/47DAP | 0.97338 | 0.865 |
57DAP/52DAP | 1.07376 | 0.948 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97378 | 0.442 |
17DAP/reference | 1.06123 | 0.546 |
27DAP/reference | 1.04852 | 0.375 |
39DAP/reference | 0.80599 | 0.2 |
41DAP/reference | 1.13451 | 0.034 |
42DAP/reference | 1.02135 | 0.287 |
43DAP/reference | 1.15375 | |
47DAP/reference | 1.00649 | 0.764 |
52DAP/reference | 1.00208 | 1 |
57DAP/reference | 0.45349 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96693 | 0.644 |
27DAP/17DAP | 0.95254 | 0.724 |
39DAP/27DAP | 1.00248 | 0.874 |
41DAP/39DAP | 0.91773 | 0.617 |
42DAP/41DAP | 1.00686 | 1 |
43DAP/42DAP | 1.01598 | 0.699 |
47DAP/43DAP | 0.95566 | 0.588 |
52DAP/47DAP | 1.00268 | 0.987 |
57DAP/52DAP | 0.91979 | 0.339 |
57DAP/7DAP | 1.01008 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82955 | 0.086 |
17DAP/reference | 0.78398 | 0.011 |
27DAP/reference | 0.75814 | 0.01 |
39DAP/reference | 0.81948 | 0.012 |
41DAP/reference | 0.94764 | 0.247 |
42DAP/reference | 0.75573 | 0.01 |
43DAP/reference | 0.76479 | 0.02 |
47DAP/reference | 0.93301 | 0.383 |
52DAP/reference | 0.75036 | 0.013 |
57DAP/reference | 0.67593 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03552 | 0.491 |
17DAP/reference | 1.0603 | 0.243 |
27DAP/reference | 1.03629 | 0.629 |
39DAP/reference | 0.98437 | 0.485 |
41DAP/reference | 0.92516 | 0.04 |
42DAP/reference | 1.04868 | 0.455 |
43DAP/reference | 1.12624 | 0.526 |
47DAP/reference | 1.05904 | 0.353 |
52DAP/reference | 1.06458 | 0.114 |
57DAP/reference | 1.28534 | 0.027 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87257 | 0.183 |
17DAP/reference | 0.89149 | 0.268 |
27DAP/reference | 0.8021 | 0.081 |
39DAP/reference | 0.7334 | 0.018 |
41DAP/reference | 0.80916 | 0.025 |
42DAP/reference | 0.72805 | 0.016 |
43DAP/reference | 0.80958 | 0.021 |
47DAP/reference | 0.973 | 0.434 |
52DAP/reference | 0.66133 | 0.077 |
57DAP/reference | 0.73858 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96245 | 1 |
26DAP/20DAP | 1.15703 | 0.581 |
34DAP/26DAP | 0.96244 | 0.898 |
51DAP/34DAP | 1.00619 | 0.988 |
52DAP/51DAP | 1.08308 | 0.304 |
53DAP/52DAP | 1.03494 | 0.901 |
55DAP/53DAP | 0.96748 | 0.619 |
57DAP/55DAP | 1.08958 | 0.461 |
62DAP/57DAP | 1.08869 | 0.767 |
68DAP/62DAP | 1.06846 | 1 |
68DAP/14DAP | 0.97568 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.01768 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.45486 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.69997 | 0.055 |
Immature Eggplant/Mature Eggplant | 17.4773 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.25895 | 0.256 |
Mature Eggplant/Ripe Tomato | 2.35944 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99914 | 1 |
1-1-2/M82 | 0.9705 | 1 |
12-2/M82 | 0.90946 | 0.955 |
12-4/M82 | 1.04268 | |
1-3/M82 | 0.86549 | 0.378 |
2-1-1/M82 | 0.94738 | |
2-1/M82 | 1.27415 | |
2-6/M82 | 1.04402 | 0.695 |
3-2/M82 | 1.1127 | 1 |
4-1-1/M82 | 0.92886 | 1 |
4-1/M82 | 1.10901 | |
4-3-2/M82 | 0.9635 | |
4-3/M82 | 1.01272 | 1 |
5-3/M82 | 1.09439 | 1 |
6-2/M82 | 1.24286 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.99777 | 1 |
7-2/M82 | 0.97958 | 1 |
9-3-2/M82 | 1.03145 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02404 | 1 |
IL2-6/WTpooled | 1.04752 | 0.788 |
IL7-5/WTpooled | 0.88042 | 1 |
IL7-3/WTpooled | 1.2251 | 1 |
IL12-4/WTpooled | 1.02479 | 1 |
IL1-4/WTpooled | 1.00493 | 1 |
WT/WTpooled | 0.95662 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02205 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12043 | 0.823 |
DC3000/delta hrp 6h | 1.51907 | 0.195 |
DC3000/delta hrp 12h | 1.08074 | 1 |
DC3000/delta hrp 24h | 0.90313 | 0.412 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09261 | 0.05 |
DC3000 delta B/DC3000 delta AB | 1.09783 | 0.398 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10949 | 1 |
Exp 36h | 2.29436 | 0.409 |
Exp 60h | 2.36027 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06336 | 1 |
Var 0h | 1.1969 | 0.594 |
Var 12h I row2-row1 | 1.16669 | 0.379 |
Var 12h NI row2-row1 | 1.05908 | 1 |
Var 36h I row2-row1 | 1.06954 | 1 |
Var 36h NI row2-row1 | 0.92367 | 0.45 |
Var 60h I row2-row1 | 0.75437 | |
Var 60h NI row2-row1 | 1.10304 | 0.904 |
Time course 0hI-0hNI | 1.01621 | 0.852 |
Time course 12hI-12hNI | 0.99345 | 1 |
Time course 36hI-36hNI | 1.00613 | 0.826 |
Time course 60hI-60hNI | 0.93059 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.53149 | 0.227 |
transgenic ySAMdc/azygous control (breaker) | 1.63881 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03682 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9945 | 0.757 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81658 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.27568 | 0.172 |
Manapal/WT (break) | 0.83096 | 0.333 |
Manapal/WT (red) | 5.30743 | 0.133 |
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