Expression of 1-1-8.4.3.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.96460.77
27DAP/17DAP1.014660.994
39DAP/27DAP1.237320.626
41DAP/39DAP0.824930.357
42DAP/41DAP1.228850.681
43DAP/42DAP0.964830.898
47DAP/43DAP1.231370.293
52DAP/47DAP0.839020.609
57DAP/52DAP1.147870.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.032560.645
17DAP/reference0.979450.664
27DAP/reference0.942250.232
39DAP/reference0.949660.298
41DAP/reference0.947980.267
42DAP/reference1.101690.108
43DAP/reference1.069160.175
47DAP/reference1.117810.022
52DAP/reference1.053510.498
57DAP/reference1.048770.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.22590.445
27DAP/17DAP1.039880.945
39DAP/27DAP0.885060.456
41DAP/39DAP1.243380.623
42DAP/41DAP0.895170.312
43DAP/42DAP0.880680.127
47DAP/43DAP1.093950.389
52DAP/47DAP0.980260.907
57DAP/52DAP1.177250.368
57DAP/7DAP1.205651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.144070.351
17DAP/reference1.22660.627
27DAP/reference1.085450.664
39DAP/reference1.104090.705
41DAP/reference1.321710.021
42DAP/reference1.216920.059
43DAP/reference1.16570.386
47DAP/reference1.273580.017
52DAP/reference1.412230.043
57DAP/reference1.294360.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.087480.732
17DAP/reference1.112370.599
27DAP/reference1.008830.735
39DAP/reference1.046280.824
41DAP/reference0.987040.519
42DAP/reference0.984460.594
43DAP/reference0.833990.175
47DAP/reference1.086340.353
52DAP/reference0.890750.029
57DAP/reference0.936420.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.236920.098
17DAP/reference0.959960.579
27DAP/reference1.466880.271
39DAP/reference1.842970.026
41DAP/reference1.282180.174
42DAP/reference1.138420.272
43DAP/reference1.1050.375
47DAP/reference1.184670.032
52DAP/reference1.133120.649
57DAP/reference1.274850.052

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.348330.966
26DAP/20DAP1.51350.115
34DAP/26DAP0.943890.898
51DAP/34DAP0.947280.611
52DAP/51DAP0.843321
53DAP/52DAP1.128580.868
55DAP/53DAP0.742160.064
57DAP/55DAP1.442230.805
62DAP/57DAP1.212070.723
68DAP/62DAP0.893420.668
68DAP/14DAP0.8480.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.21210.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.874020.371
Mature Green Tomato/Ripe Tomato1.023760.898
Immature Eggplant/Mature Eggplant1.072660.348
Ripe Pepper/Ripe Tomato0.6971
Mature Eggplant/Ripe Tomato1.15296

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.915950.673
1-1-2/M821.125450.891
12-2/M82N/AN/A
12-4/M821.43586
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.86209
4-1-1/M82N/AN/A
4-1/M821.60572
4-3-2/M821.33948
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M821.14747
7-1/M821.0485
7-2/M82N/AN/A
9-3-2/M820.879770.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.054650.493
IL2-6/WTpooled1.28110.531
IL7-5/WTpooled1.019620.792
IL7-3/WTpooled0.899220.418
IL12-4/WTpooled0.989611
IL1-4/WTpooled1.190451
WT/WTpooled0.983011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.5581

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.979181
DC3000/delta hrp 6h0.943060.95
DC3000/delta hrp 12h0.935721
DC3000/delta hrp 24h1.033811

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.49370.057
DC3000 delta B/DC3000 delta AB1.195880.215

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.803141
Exp 36h1.136240.693
Exp 60h1.235330.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981241
Var 0h1.174140.374
Var 12h I row2-row10.855750.705
Var 12h NI row2-row11.361490.649
Var 36h I row2-row11.258290.41
Var 36h NI row2-row10.962750.852
Var 60h I row2-row10.68406
Var 60h NI row2-row10.78470.351
Time course 0hI-0hNI0.873910.256
Time course 12hI-12hNI1.12950.317
Time course 36hI-36hNI1.437170.044
Time course 60hI-60hNI1.540370.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967690.377
transgenic ySAMdc/azygous control (breaker)1.313840.248
transgenic ySAMdc/azygous control (red)1.137270.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.246130.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.767990.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.005021
Manapal/WT (break)1.242490.381
Manapal/WT (red)0.905420.36