Expression of 1-1-8.4.3.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17189 | 0.534 |
27DAP/17DAP | 1.05352 | 1 |
39DAP/27DAP | 1.15544 | 0.8 |
41DAP/39DAP | 1.10976 | 1 |
42DAP/41DAP | 1.12561 | 0.898 |
43DAP/42DAP | 1.12116 | 0.991 |
47DAP/43DAP | 0.90736 | 0.663 |
52DAP/47DAP | 1.13217 | 0.832 |
57DAP/52DAP | 1.17001 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02556 | 1 |
17DAP/reference | 1.03737 | 0.606 |
27DAP/reference | 0.95411 | 0.552 |
39DAP/reference | 0.90972 | 0.541 |
41DAP/reference | 0.89769 | 0.542 |
42DAP/reference | 0.90028 | 0.202 |
43DAP/reference | 1.07115 | 0.928 |
47DAP/reference | 0.91457 | 0.191 |
52DAP/reference | 0.75891 | 0.058 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79959 | 0.044 |
27DAP/17DAP | 1.32596 | 0.458 |
39DAP/27DAP | 0.92659 | 0.87 |
41DAP/39DAP | 0.84001 | 0.599 |
42DAP/41DAP | 1.19138 | 0.334 |
43DAP/42DAP | 1.08069 | 0.788 |
47DAP/43DAP | 0.82665 | 0.543 |
52DAP/47DAP | 0.48841 | 0.207 |
57DAP/52DAP | 0.77688 | |
57DAP/7DAP | 1.47337 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.58716 | 0.049 |
17DAP/reference | 1.16954 | 0.162 |
27DAP/reference | 0.88916 | 0.348 |
39DAP/reference | 1.05761 | 0.57 |
41DAP/reference | 0.93665 | 0.311 |
42DAP/reference | 1.01896 | 0.791 |
43DAP/reference | 1.01333 | 0.727 |
47DAP/reference | 1.07372 | 0.717 |
52DAP/reference | 1.31 | 0.149 |
57DAP/reference | 1.36221 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00385 | 0.97 |
17DAP/reference | 1.19379 | 0.124 |
27DAP/reference | 1.08898 | 0.516 |
39DAP/reference | 0.82617 | 0.032 |
41DAP/reference | 1.08271 | 0.353 |
42DAP/reference | 0.78629 | 0.025 |
43DAP/reference | 0.89615 | 0.404 |
47DAP/reference | 0.89225 | 0.102 |
52DAP/reference | 0.91089 | 0.239 |
57DAP/reference | 0.98747 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59123 | 0.015 |
17DAP/reference | 1.15238 | 0.45 |
27DAP/reference | 1.35732 | 0.125 |
39DAP/reference | 1.21134 | 0.075 |
41DAP/reference | 0.75916 | 0.05 |
42DAP/reference | 0.9415 | 0.671 |
43DAP/reference | 0.99777 | 0.827 |
47DAP/reference | 1.00119 | 0.593 |
52DAP/reference | 0.9973 | 0.871 |
57DAP/reference | 0.95878 | 0.424 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00948 | 1 |
26DAP/20DAP | 1.62566 | |
34DAP/26DAP | 0.90391 | 0.909 |
51DAP/34DAP | 0.63661 | 0.069 |
52DAP/51DAP | 0.84246 | 1 |
53DAP/52DAP | 1.29287 | 0.356 |
55DAP/53DAP | 0.68913 | 0.065 |
57DAP/55DAP | 1.63475 | 0.136 |
62DAP/57DAP | 0.76366 | 0.466 |
68DAP/62DAP | 0.97021 | 0.81 |
68DAP/14DAP | 0.84936 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.33879 | 0.198 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.61817 | 0.145 |
Mature Green Tomato/Ripe Tomato | 0.79218 | 0.287 |
Immature Eggplant/Mature Eggplant | 0.75879 | 0.092 |
Ripe Pepper/Ripe Tomato | 2.59513 | 1 |
Mature Eggplant/Ripe Tomato | 1.28293 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9662 | 0.961 |
1-1-2/M82 | 1.17917 | 1 |
12-2/M82 | 0.86743 | 0.955 |
12-4/M82 | 0.90513 | 1 |
1-3/M82 | 1.34702 | 0.479 |
2-1-1/M82 | 0.91483 | |
2-1/M82 | 0.95528 | 0.322 |
2-6/M82 | 0.86192 | 1 |
3-2/M82 | 1.07918 | 0.84 |
4-1-1/M82 | 1.01939 | 1 |
4-1/M82 | 0.61929 | |
4-3-2/M82 | 1.15916 | 0.508 |
4-3/M82 | 1.08441 | 1 |
5-3/M82 | 1.12945 | 0.572 |
6-2/M82 | 1.15916 | 0.235 |
6-3/M82 | 0.9764 | 1 |
7-1/M82 | 1.23791 | 1 |
7-2/M82 | 1.05327 | 1 |
9-3-2/M82 | 1.16818 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05367 | 0.493 |
IL2-6/WTpooled | 0.73159 | 0.473 |
IL7-5/WTpooled | 0.64366 | 1 |
IL7-3/WTpooled | 1.02931 | 1 |
IL12-4/WTpooled | 1.08739 | 0.538 |
IL1-4/WTpooled | 0.97229 | 0.562 |
WT/WTpooled | 0.98357 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94584 | 1 |
DC3000/delta hrp 6h | 0.88156 | 0.95 |
DC3000/delta hrp 12h | 1.02977 | 1 |
DC3000/delta hrp 24h | 0.88496 | 0.33 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09684 | 1 |
Exp 36h | 0.8744 | 0.504 |
Exp 60h | 0.81264 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97477 | |
Var 0h | 0.40598 | 0.933 |
Var 12h I row2-row1 | 0.79439 | 0.363 |
Var 12h NI row2-row1 | 1.00849 | 1 |
Var 36h I row2-row1 | 1.19211 | 0.304 |
Var 36h NI row2-row1 | 0.95212 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.85803 | 0.866 |
Time course 0hI-0hNI | 1.13751 | 0.323 |
Time course 12hI-12hNI | 0.8268 | 0.142 |
Time course 36hI-36hNI | 1.0547 | 0.58 |
Time course 60hI-60hNI | 1.74646 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87905 | 0.229 |
transgenic ySAMdc/azygous control (breaker) | 0.94646 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.01584 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07839 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98912 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.29775 | 0.084 |
Manapal/WT (break) | 1.11743 | 0.381 |
Manapal/WT (red) | 0.94225 | 0.315 |
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