Expression of 1-1-8.4.4.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92405 | 0.617 |
27DAP/17DAP | 0.76894 | 0.229 |
39DAP/27DAP | 0.93329 | 0.62 |
41DAP/39DAP | 0.93186 | 0.715 |
42DAP/41DAP | 1.01755 | 1 |
43DAP/42DAP | 1.10793 | 0.91 |
47DAP/43DAP | 0.91768 | 0.699 |
52DAP/47DAP | 1.0979 | 0.76 |
57DAP/52DAP | 1.02584 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.51641 | 0.207 |
17DAP/reference | 1.31473 | 0.355 |
27DAP/reference | 1.23291 | 0.018 |
39DAP/reference | 1.72348 | 0.423 |
41DAP/reference | 0.9702 | 0.667 |
42DAP/reference | 1.10586 | 0.609 |
43DAP/reference | 0.96498 | 0.611 |
47DAP/reference | 1.19603 | 0.495 |
52DAP/reference | 1.54299 | 0.01 |
57DAP/reference | 1.2373 | 0.136 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.67272 | 0.785 |
27DAP/17DAP | 1.79613 | 0.724 |
39DAP/27DAP | 1.39108 | 0.067 |
41DAP/39DAP | 1.42762 | 0.719 |
42DAP/41DAP | 1.33047 | 0.687 |
43DAP/42DAP | N/A | N/A |
47DAP/43DAP | 0.98719 | |
52DAP/47DAP | 1.57919 | 0.362 |
57DAP/52DAP | 2.25907 | |
57DAP/7DAP | 1.08322 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01226 | 1 |
17DAP/reference | 0.97465 | 0.447 |
27DAP/reference | 1.09612 | 0.107 |
39DAP/reference | 1.04394 | 0.314 |
41DAP/reference | 1.06769 | 0.539 |
42DAP/reference | 1.05247 | 0.233 |
43DAP/reference | 0.95908 | 0.175 |
47DAP/reference | 1.22707 | 0.187 |
52DAP/reference | 0.93449 | 0.232 |
57DAP/reference | 0.9706 | 0.314 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94243 | 0.786 |
17DAP/reference | 1.09998 | 0.859 |
27DAP/reference | 0.76277 | 0.139 |
39DAP/reference | 1.07873 | 0.806 |
41DAP/reference | 1.1488 | 0.718 |
42DAP/reference | 1.3135 | 0.029 |
43DAP/reference | 1.10602 | 1 |
47DAP/reference | 1.21311 | 0.021 |
52DAP/reference | 1.41619 | 0.006 |
57DAP/reference | 1.1298 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29722 | 0.028 |
17DAP/reference | 1.22253 | 0.306 |
27DAP/reference | 1.23212 | 0.02 |
39DAP/reference | 1.12094 | 0.072 |
41DAP/reference | 1.10418 | 0.086 |
42DAP/reference | 1.09231 | 0.321 |
43DAP/reference | 0.96271 | 0.484 |
47DAP/reference | 1.20324 | 0.405 |
52DAP/reference | 1.48199 | 0.153 |
57DAP/reference | 0.96547 | 0.553 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25273 | 0.916 |
26DAP/20DAP | 1.80095 | |
34DAP/26DAP | 2.92295 | 0.542 |
51DAP/34DAP | 0.79761 | 0.508 |
52DAP/51DAP | 1.04078 | |
53DAP/52DAP | 1.06255 | 1 |
55DAP/53DAP | 0.69328 | 0.592 |
57DAP/55DAP | 1.64534 | |
62DAP/57DAP | 0.95314 | 0.994 |
68DAP/62DAP | 0.53228 | 0.641 |
68DAP/14DAP | 1.34933 | 0.311 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89571 | 0.493 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.46955 | |
Mature Green Tomato/Ripe Tomato | 1.88193 | 0.016 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.66729 | |
Mature Eggplant/Ripe Tomato | 3.55275 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90186 | 0.536 |
1-1-2/M82 | 0.90527 | 1 |
12-2/M82 | 1.03996 | 1 |
12-4/M82 | 1.01116 | 1 |
1-3/M82 | 1.00662 | 1 |
2-1-1/M82 | 1.13879 | 0.262 |
2-1/M82 | 1.12945 | 1 |
2-6/M82 | 0.9815 | 1 |
3-2/M82 | 1.00688 | 1 |
4-1-1/M82 | 1.13137 | 0.977 |
4-1/M82 | 1.07361 | 1 |
4-3-2/M82 | 0.93423 | 1 |
4-3/M82 | 0.98705 | 1 |
5-3/M82 | 0.98698 | 1 |
6-2/M82 | 1.00788 | 1 |
6-3/M82 | 0.98585 | 1 |
7-1/M82 | 0.98445 | 1 |
7-2/M82 | 1.00055 | 1 |
9-3-2/M82 | 0.97529 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93816 | 1 |
IL2-6/WTpooled | 1.38754 | |
IL7-5/WTpooled | 1.0966 | 1 |
IL7-3/WTpooled | 2.01296 | |
IL12-4/WTpooled | 1.08863 | 0.839 |
IL1-4/WTpooled | 0.81666 | |
WT/WTpooled | 0.8751 | 0.425 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03945 | |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.2651 | 1 |
DC3000/delta hrp 24h | 0.95702 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.00895 | 0.98 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.45436 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.39952 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.6721 | 0.299 |
Manapal/WT (red) | 1.1322 | 1 |
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