Expression of 1-1-8.4.4.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.924050.617
27DAP/17DAP0.768940.229
39DAP/27DAP0.933290.62
41DAP/39DAP0.931860.715
42DAP/41DAP1.017551
43DAP/42DAP1.107930.91
47DAP/43DAP0.917680.699
52DAP/47DAP1.09790.76
57DAP/52DAP1.025841

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.516410.207
17DAP/reference1.314730.355
27DAP/reference1.232910.018
39DAP/reference1.723480.423
41DAP/reference0.97020.667
42DAP/reference1.105860.609
43DAP/reference0.964980.611
47DAP/reference1.196030.495
52DAP/reference1.542990.01
57DAP/reference1.23730.136

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.672720.785
27DAP/17DAP1.796130.724
39DAP/27DAP1.391080.067
41DAP/39DAP1.427620.719
42DAP/41DAP1.330470.687
43DAP/42DAPN/AN/A
47DAP/43DAP0.98719
52DAP/47DAP1.579190.362
57DAP/52DAP2.25907
57DAP/7DAP1.08322

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012261
17DAP/reference0.974650.447
27DAP/reference1.096120.107
39DAP/reference1.043940.314
41DAP/reference1.067690.539
42DAP/reference1.052470.233
43DAP/reference0.959080.175
47DAP/reference1.227070.187
52DAP/reference0.934490.232
57DAP/reference0.97060.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942430.786
17DAP/reference1.099980.859
27DAP/reference0.762770.139
39DAP/reference1.078730.806
41DAP/reference1.14880.718
42DAP/reference1.31350.029
43DAP/reference1.106021
47DAP/reference1.213110.021
52DAP/reference1.416190.006
57DAP/reference1.12980.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.297220.028
17DAP/reference1.222530.306
27DAP/reference1.232120.02
39DAP/reference1.120940.072
41DAP/reference1.104180.086
42DAP/reference1.092310.321
43DAP/reference0.962710.484
47DAP/reference1.203240.405
52DAP/reference1.481990.153
57DAP/reference0.965470.553

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.252730.916
26DAP/20DAP1.80095
34DAP/26DAP2.922950.542
51DAP/34DAP0.797610.508
52DAP/51DAP1.04078
53DAP/52DAP1.062551
55DAP/53DAP0.693280.592
57DAP/55DAP1.64534
62DAP/57DAP0.953140.994
68DAP/62DAP0.532280.641
68DAP/14DAP1.349330.311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.895710.493

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.46955
Mature Green Tomato/Ripe Tomato1.881930.016
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.66729
Mature Eggplant/Ripe Tomato3.552750.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.901860.536
1-1-2/M820.905271
12-2/M821.039961
12-4/M821.011161
1-3/M821.006621
2-1-1/M821.138790.262
2-1/M821.129451
2-6/M820.98151
3-2/M821.006881
4-1-1/M821.131370.977
4-1/M821.073611
4-3-2/M820.934231
4-3/M820.987051
5-3/M820.986981
6-2/M821.007881
6-3/M820.985851
7-1/M820.984451
7-2/M821.000551
9-3-2/M820.975290.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.938161
IL2-6/WTpooled1.38754
IL7-5/WTpooled1.09661
IL7-3/WTpooled2.01296
IL12-4/WTpooled1.088630.839
IL1-4/WTpooled0.81666
WT/WTpooled0.87510.425

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03945
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.26511
DC3000/delta hrp 24h0.957020.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.008950.98
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.454360.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.399520.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.67210.299
Manapal/WT (red)1.13221