Expression of 1-1-8.4.5.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01755 | 1 |
27DAP/17DAP | 0.9376 | 0.877 |
39DAP/27DAP | 0.74473 | 0.361 |
41DAP/39DAP | 1.26497 | 0.442 |
42DAP/41DAP | 0.96288 | 1 |
43DAP/42DAP | 0.91747 | 0.846 |
47DAP/43DAP | 1.20845 | 0.776 |
52DAP/47DAP | 1.07799 | 0.973 |
57DAP/52DAP | 1.06664 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14505 | 0.03 |
17DAP/reference | 1.00735 | 0.843 |
27DAP/reference | 0.9824 | 0.654 |
39DAP/reference | 1.04204 | 0.386 |
41DAP/reference | 0.93215 | 0.267 |
42DAP/reference | 1.07932 | 0.012 |
43DAP/reference | 1.04223 | 0.306 |
47DAP/reference | 1.06191 | 0.34 |
52DAP/reference | 0.89945 | 0.082 |
57DAP/reference | 1.00166 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94516 | 0.613 |
27DAP/17DAP | 0.96388 | 0.878 |
39DAP/27DAP | 1.02488 | 0.758 |
41DAP/39DAP | 1.03318 | 0.887 |
42DAP/41DAP | 1.03174 | 1 |
43DAP/42DAP | 1.0507 | 0.382 |
47DAP/43DAP | 0.99221 | 0.985 |
52DAP/47DAP | 1.02586 | 0.945 |
57DAP/52DAP | 0.93627 | 0.494 |
57DAP/7DAP | 0.82452 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86743 | 0.104 |
17DAP/reference | 0.83677 | 0.018 |
27DAP/reference | 0.84182 | 0.01 |
39DAP/reference | 0.81691 | 0.011 |
41DAP/reference | 0.79932 | 0.014 |
42DAP/reference | 0.71047 | 0.01 |
43DAP/reference | 0.74673 | 0.012 |
47DAP/reference | 0.97302 | 0.671 |
52DAP/reference | 0.63902 | 0.012 |
57DAP/reference | 0.74243 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22226 | 0.203 |
17DAP/reference | 1.09413 | 0.176 |
27DAP/reference | 1.06679 | 0.507 |
39DAP/reference | 0.96867 | 0.392 |
41DAP/reference | 1.00993 | 0.749 |
42DAP/reference | 1.03499 | 0.664 |
43DAP/reference | 1.14309 | 0.401 |
47DAP/reference | 1.01212 | 0.795 |
52DAP/reference | 0.97554 | 0.407 |
57DAP/reference | 1.08514 | 0.353 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91404 | 0.147 |
17DAP/reference | 0.96744 | 0.55 |
27DAP/reference | 0.72921 | 0.028 |
39DAP/reference | 0.81642 | 0.05 |
41DAP/reference | 0.81298 | 0.019 |
42DAP/reference | 0.86115 | 0.016 |
43DAP/reference | 0.90699 | 0.084 |
47DAP/reference | 1.00082 | 1 |
52DAP/reference | 0.85317 | 0.268 |
57DAP/reference | 0.8028 | 0.118 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00178 | 1 |
26DAP/20DAP | 0.94037 | 0.512 |
34DAP/26DAP | 1.04501 | 1 |
51DAP/34DAP | 1.06663 | 0.706 |
52DAP/51DAP | 1.0383 | 0.638 |
53DAP/52DAP | 0.76258 | |
55DAP/53DAP | 1.08681 | 0.813 |
57DAP/55DAP | 1.04586 | 0.559 |
62DAP/57DAP | 0.95384 | 0.28 |
68DAP/62DAP | 1.24213 | 0.984 |
68DAP/14DAP | 0.87867 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08693 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.50225 | 0.157 |
Mature Green Tomato/Ripe Tomato | 1.68264 | 0.166 |
Immature Eggplant/Mature Eggplant | 1.69694 | 0.053 |
Ripe Pepper/Ripe Tomato | 0.25441 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.1708 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95726 | 0.961 |
1-1-2/M82 | 1.07299 | 1 |
12-2/M82 | 1.06691 | 1 |
12-4/M82 | 0.90177 | 1 |
1-3/M82 | 1.40462 | |
2-1-1/M82 | 1.07384 | |
2-1/M82 | 0.74707 | |
2-6/M82 | 0.84068 | 0.501 |
3-2/M82 | 1.15569 | 0.967 |
4-1-1/M82 | 0.81749 | 1 |
4-1/M82 | 1.11585 | |
4-3-2/M82 | 0.83888 | 0.487 |
4-3/M82 | 0.90084 | 1 |
5-3/M82 | 0.95199 | 1 |
6-2/M82 | 1.00823 | |
6-3/M82 | 0.98272 | |
7-1/M82 | 0.9725 | 1 |
7-2/M82 | 1.12702 | 0.324 |
9-3-2/M82 | 0.95944 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.66303 | |
IL2-6/WTpooled | 0.62983 | |
IL7-5/WTpooled | 1.24279 | |
IL7-3/WTpooled | 0.72611 | 0.294 |
IL12-4/WTpooled | 1.18123 | 0.695 |
IL1-4/WTpooled | 0.82254 | |
WT/WTpooled | 0.98976 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.76965 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99595 | 1 |
DC3000/delta hrp 6h | 0.93814 | 0.95 |
DC3000/delta hrp 12h | 0.90712 | 1 |
DC3000/delta hrp 24h | 1.53514 | 0.029 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.27794 | 0.192 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.80458 | 1 |
Exp 36h | 1.15997 | 1 |
Exp 60h | 0.79626 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02319 | 1 |
Var 0h | 0.88644 | 1 |
Var 12h I row2-row1 | 1.07603 | 0.506 |
Var 12h NI row2-row1 | 0.88065 | 0.466 |
Var 36h I row2-row1 | 1.00016 | 1 |
Var 36h NI row2-row1 | 0.9636 | 0.61 |
Var 60h I row2-row1 | 1.36288 | 1 |
Var 60h NI row2-row1 | 1.25201 | 0.904 |
Time course 0hI-0hNI | 0.98787 | 0.958 |
Time course 12hI-12hNI | 1.02102 | 0.88 |
Time course 36hI-36hNI | 1.3165 | 0.651 |
Time course 60hI-60hNI | 1.08089 | 0.495 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.41377 | 0.271 |
transgenic ySAMdc/azygous control (breaker) | 1.04477 | 1 |
transgenic ySAMdc/azygous control (red) | 0.84358 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12287 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04603 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.27129 | 1 |
Manapal/WT (break) | 1.60997 | 0.183 |
Manapal/WT (red) | 1.06477 | 1 |
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