Expression of 1-1-8.4.5.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.017551
27DAP/17DAP0.93760.877
39DAP/27DAP0.744730.361
41DAP/39DAP1.264970.442
42DAP/41DAP0.962881
43DAP/42DAP0.917470.846
47DAP/43DAP1.208450.776
52DAP/47DAP1.077990.973
57DAP/52DAP1.066640.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.145050.03
17DAP/reference1.007350.843
27DAP/reference0.98240.654
39DAP/reference1.042040.386
41DAP/reference0.932150.267
42DAP/reference1.079320.012
43DAP/reference1.042230.306
47DAP/reference1.061910.34
52DAP/reference0.899450.082
57DAP/reference1.001660.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.945160.613
27DAP/17DAP0.963880.878
39DAP/27DAP1.024880.758
41DAP/39DAP1.033180.887
42DAP/41DAP1.031741
43DAP/42DAP1.05070.382
47DAP/43DAP0.992210.985
52DAP/47DAP1.025860.945
57DAP/52DAP0.936270.494
57DAP/7DAP0.824521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.867430.104
17DAP/reference0.836770.018
27DAP/reference0.841820.01
39DAP/reference0.816910.011
41DAP/reference0.799320.014
42DAP/reference0.710470.01
43DAP/reference0.746730.012
47DAP/reference0.973020.671
52DAP/reference0.639020.012
57DAP/reference0.742430.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.222260.203
17DAP/reference1.094130.176
27DAP/reference1.066790.507
39DAP/reference0.968670.392
41DAP/reference1.009930.749
42DAP/reference1.034990.664
43DAP/reference1.143090.401
47DAP/reference1.012120.795
52DAP/reference0.975540.407
57DAP/reference1.085140.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914040.147
17DAP/reference0.967440.55
27DAP/reference0.729210.028
39DAP/reference0.816420.05
41DAP/reference0.812980.019
42DAP/reference0.861150.016
43DAP/reference0.906990.084
47DAP/reference1.000821
52DAP/reference0.853170.268
57DAP/reference0.80280.118

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001781
26DAP/20DAP0.940370.512
34DAP/26DAP1.045011
51DAP/34DAP1.066630.706
52DAP/51DAP1.03830.638
53DAP/52DAP0.76258
55DAP/53DAP1.086810.813
57DAP/55DAP1.045860.559
62DAP/57DAP0.953840.28
68DAP/62DAP1.242130.984
68DAP/14DAP0.878670.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.086930.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.502250.157
Mature Green Tomato/Ripe Tomato1.682640.166
Immature Eggplant/Mature Eggplant1.696940.053
Ripe Pepper/Ripe Tomato0.254410.224
Mature Eggplant/Ripe Tomato0.17080.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.957260.961
1-1-2/M821.072991
12-2/M821.066911
12-4/M820.901771
1-3/M821.40462
2-1-1/M821.07384
2-1/M820.74707
2-6/M820.840680.501
3-2/M821.155690.967
4-1-1/M820.817491
4-1/M821.11585
4-3-2/M820.838880.487
4-3/M820.900841
5-3/M820.951991
6-2/M821.00823
6-3/M820.98272
7-1/M820.97251
7-2/M821.127020.324
9-3-2/M820.959441

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.66303
IL2-6/WTpooled0.62983
IL7-5/WTpooled1.24279
IL7-3/WTpooled0.726110.294
IL12-4/WTpooled1.181230.695
IL1-4/WTpooled0.82254
WT/WTpooled0.989761

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.769651

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.995951
DC3000/delta hrp 6h0.938140.95
DC3000/delta hrp 12h0.907121
DC3000/delta hrp 24h1.535140.029

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.277940.192

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.804581
Exp 36h1.159971
Exp 60h0.796260.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023191
Var 0h0.886441
Var 12h I row2-row11.076030.506
Var 12h NI row2-row10.880650.466
Var 36h I row2-row11.000161
Var 36h NI row2-row10.96360.61
Var 60h I row2-row11.362881
Var 60h NI row2-row11.252010.904
Time course 0hI-0hNI0.987870.958
Time course 12hI-12hNI1.021020.88
Time course 36hI-36hNI1.31650.651
Time course 60hI-60hNI1.080890.495

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.413770.271
transgenic ySAMdc/azygous control (breaker)1.044771
transgenic ySAMdc/azygous control (red)0.843581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.122870.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.046031

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.271291
Manapal/WT (break)1.609970.183
Manapal/WT (red)1.064771