Expression of 1-1-8.4.6.13
Experiment: Wild type tomato fruit development (set 1)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 1.17728 | 0.545 |
| 27DAP/17DAP | 0.90695 | 0.801 |
| 39DAP/27DAP | 1.07807 | 0.876 |
| 41DAP/39DAP | 0.73654 | 0.119 |
| 42DAP/41DAP | 0.92986 | 1 |
| 43DAP/42DAP | 0.88737 | 0.67 |
| 47DAP/43DAP | 1.03194 | 1 |
| 52DAP/47DAP | 1.22819 | 0.608 |
| 57DAP/52DAP | 1.00504 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.85274 | 0.087 |
| 17DAP/reference | 1.11665 | 0.042 |
| 27DAP/reference | 1.07727 | 0.339 |
| 39DAP/reference | 1.11992 | 0.165 |
| 41DAP/reference | 1.13978 | 0.038 |
| 42DAP/reference | 0.85196 | 0.018 |
| 43DAP/reference | 1.02066 | 1 |
| 47DAP/reference | 0.95981 | 0.242 |
| 52DAP/reference | 0.8203 | 0.093 |
| 57DAP/reference | 0.82441 | 0.044 |
Experiment: tomato Never-ripe mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 1.08457 | 0.284 |
| 27DAP/17DAP | 0.97849 | 0.748 |
| 39DAP/27DAP | 0.91645 | 0.124 |
| 41DAP/39DAP | 1.05799 | 0.705 |
| 42DAP/41DAP | 0.95675 | 0.541 |
| 43DAP/42DAP | 0.89139 | 0.029 |
| 47DAP/43DAP | 0.98302 | 0.805 |
| 52DAP/47DAP | 0.98151 | 0.902 |
| 57DAP/52DAP | 0.99559 | 0.869 |
| 57DAP/7DAP | 0.95611 | 1 |
Experiment: tomato rin mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.94633 | 0.361 |
| 17DAP/reference | 0.74805 | 0.008 |
| 27DAP/reference | 1.34559 | 0.664 |
| 39DAP/reference | 1.00676 | 0.745 |
| 41DAP/reference | 0.97724 | 0.512 |
| 42DAP/reference | 0.9909 | 0.582 |
| 43DAP/reference | 1.04723 | 0.974 |
| 47DAP/reference | 1.07521 | 0.745 |
| 52DAP/reference | 1.2445 | 0.025 |
| 57DAP/reference | 0.9802 | 0.549 |
Experiment: tomato nor mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.91221 | 0.197 |
| 17DAP/reference | 0.92977 | 0.102 |
| 27DAP/reference | 0.8469 | 0.139 |
| 39DAP/reference | 1.02114 | 1 |
| 41DAP/reference | 1.02339 | 1 |
| 42DAP/reference | 1.01471 | 1 |
| 43DAP/reference | 0.91661 | 0.352 |
| 47DAP/reference | 1.01917 | 0.916 |
| 52DAP/reference | 0.98923 | 0.537 |
| 57DAP/reference | 1.01049 | 1 |
Experiment: tomato hp1 mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.98627 | 0.607 |
| 17DAP/reference | 0.90918 | 0.462 |
| 27DAP/reference | 0.8515 | |
| 39DAP/reference | 1.24862 | 0.075 |
| 41DAP/reference | 1.01672 | 1 |
| 42DAP/reference | 0.79828 | 0.287 |
| 43DAP/reference | 1.10367 | 1 |
| 47DAP/reference | 1.05333 | 0.372 |
| 52DAP/reference | 1.00653 | 0.871 |
| 57DAP/reference | 0.78365 | 0.069 |
Experiment: Wild type pepper fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 20DAP/14DAP | 0.95773 | 1 |
| 26DAP/20DAP | 0.97163 | |
| 34DAP/26DAP | 0.98889 | 1 |
| 51DAP/34DAP | 1.0348 | 0.637 |
| 52DAP/51DAP | 0.95613 | |
| 53DAP/52DAP | 0.97278 | 0.844 |
| 55DAP/53DAP | 0.9872 | 0.852 |
| 57DAP/55DAP | 1.03211 | 0.997 |
| 62DAP/57DAP | 0.90141 | 0.871 |
| 68DAP/62DAP | 0.99322 | 0.885 |
| 68DAP/14DAP | 0.70956 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
| hybridization | ratio | FDR (corrected p value) |
|---|
| Tomato Breaker/Pepper Breaker | 1.13928 | 0.184 |
Experiment: Solanaceae fruit comparison
| hybridization | ratio | FDR (corrected p value) |
|---|
| Green Pepper/Ripe Pepper | 0.73684 | 0.203 |
| Mature Green Tomato/Ripe Tomato | 3.92005 | 0.015 |
| Immature Eggplant/Mature Eggplant | 1.75205 | 0.05 |
| Ripe Pepper/Ripe Tomato | 1.45044 | 1 |
| Mature Eggplant/Ripe Tomato | 5.09395 | 0.373 |
Experiment: IL carotenoid
| hybridization | ratio | FDR (corrected p value) |
|---|
| 11-1/M82 | 1.00024 | 1 |
| 1-1-2/M82 | 0.93836 | 1 |
| 12-2/M82 | 0.95019 | 0.955 |
| 12-4/M82 | 1.012 | 1 |
| 1-3/M82 | 1.0007 | 1 |
| 2-1-1/M82 | 1.09423 | |
| 2-1/M82 | 0.98411 | 1 |
| 2-6/M82 | 0.99167 | 1 |
| 3-2/M82 | 0.90657 | 0.752 |
| 4-1-1/M82 | 0.99652 | 1 |
| 4-1/M82 | 1.03855 | 1 |
| 4-3-2/M82 | 0.9555 | 1 |
| 4-3/M82 | 0.97751 | 1 |
| 5-3/M82 | 1.01904 | 1 |
| 6-2/M82 | 1.01396 | 1 |
| 6-3/M82 | 0.97748 | 1 |
| 7-1/M82 | 0.95133 | 1 |
| 7-2/M82 | 1.02768 | 1 |
| 9-3-2/M82 | 0.85501 | 0.355 |
Experiment: Tomato introgression line transcript analysis
| hybridization | ratio | FDR (corrected p value) |
|---|
| IL4-4/WTpooled | 1.06218 | 1 |
| IL2-6/WTpooled | 1.08549 | 0.427 |
| IL7-5/WTpooled | 1.02681 | 1 |
| IL7-3/WTpooled | 1.10938 | 1 |
| IL12-4/WTpooled | 1.04875 | 0.839 |
| IL1-4/WTpooled | 0.9745 | 1 |
| WT/WTpooled | 0.97499 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
| hybridization | ratio | FDR (corrected p value) |
|---|
| 10 h post inoculation | 1.09172 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000/delat hrp 0h | 0.98245 | 1 |
| DC3000/delta hrp 6h | 1.03764 | 0.95 |
| DC3000/delta hrp 12h | 1.0059 | 1 |
| DC3000/delta hrp 24h | 0.98966 | 1 |
Experiment: DC3000 effector mutants
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000 delta A/DC3000 delta AB | 0.86312 | 0.597 |
| DC3000 delta B/DC3000 delta AB | 1.13952 | 0.253 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
| hybridization | ratio | FDR (corrected p value) |
|---|
| Exp 12h | 1.05848 | 1 |
| Exp 36h | 1.15809 | 1 |
| Exp 60h | 1.60273 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
| hybridization | ratio | FDR (corrected p value) |
|---|
| self-self | 1.0145 | 1 |
| Var 0h | 1.0768 | 0.98 |
| Var 12h I row2-row1 | 1.32396 | 0.254 |
| Var 12h NI row2-row1 | 1.07902 | 1 |
| Var 36h I row2-row1 | 1.06375 | 1 |
| Var 36h NI row2-row1 | 0.85787 | 0.549 |
| Var 60h I row2-row1 | 1.00655 | 1 |
| Var 60h NI row2-row1 | 1.05867 | 0.904 |
| Time course 0hI-0hNI | 1.06249 | 0.833 |
| Time course 12hI-12hNI | 1.00492 | 0.9 |
| Time course 36hI-36hNI | 0.9669 | 0.323 |
| Time course 60hI-60hNI | 1.30517 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
| hybridization | ratio | FDR (corrected p value) |
|---|
| transgenic ySAMdc/azygous control (mature green) | 1.08674 | 0.397 |
| transgenic ySAMdc/azygous control (breaker) | 0.74698 | 0.142 |
| transgenic ySAMdc/azygous control (red) | 0.80981 | 1 |
Experiment: Tomato root culture and Al treatment
| hybridization | ratio | FDR (corrected p value) |
|---|
| Al-treated/control | 1.1951 | 0.069 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
| hybridization | ratio | FDR (corrected p value) |
|---|
| salt-treated/no salt | 0.60884 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
| hybridization | ratio | FDR (corrected p value) |
|---|
| Manapal/WT (mature green) | 0.95781 | 1 |
| Manapal/WT (break) | 1.04952 | 1 |
| Manapal/WT (red) | 0.80725 | 0.36 |
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