Expression of 1-1-8.4.6.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.125290.057
27DAP/17DAP1.318640.688
39DAP/27DAP1.347880.38
41DAP/39DAP0.784340.225
42DAP/41DAP0.888210.774
43DAP/42DAP1.004990.937
47DAP/43DAP0.966010.847
52DAP/47DAP0.80640.513
57DAP/52DAP0.980890.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.960020.476
17DAP/reference1.191540.143
27DAP/reference1.050060.82
39DAP/reference1.178060.149
41DAP/reference1.199710.265
42DAP/reference0.853090.04
43DAP/reference1.067390.899
47DAP/reference0.941370.3
52DAP/reference0.70920.058
57DAP/reference0.823290.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.983330.75
27DAP/17DAP1.036850.867
39DAP/27DAP1.027430.677
41DAP/39DAP0.953920.729
42DAP/41DAP0.987550.83
43DAP/42DAP0.973750.576
47DAP/43DAP0.984750.928
52DAP/47DAP1.033540.851
57DAP/52DAP1.008391
57DAP/7DAP0.980151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97270.402
17DAP/reference0.960220.389
27DAP/reference1.138380.16
39DAP/reference1.20380.007
41DAP/reference1.045530.655
42DAP/reference1.072190.534
43DAP/reference1.169910.07
47DAP/reference0.924390.504
52DAP/reference1.162570.159
57DAP/reference1.131730.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.199150.355
17DAP/reference1.271280.028
27DAP/reference0.904370.292
39DAP/reference0.884860.227
41DAP/reference1.081411
42DAP/reference0.838530.189
43DAP/reference1.217440.338
47DAP/reference0.996710.714
52DAP/reference1.07180.667
57DAP/reference1.163110.314

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960130.362
17DAP/reference1.018320.87
27DAP/reference0.868210.14
39DAP/reference1.022250.691
41DAP/reference1.064770.889
42DAP/reference0.830620.172
43DAP/reference0.860630.267
47DAP/reference0.975810.494
52DAP/reference0.737050.061
57DAP/reference0.720030.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.012081
26DAP/20DAP0.873790.244
34DAP/26DAP1.021841
51DAP/34DAP0.94190.667
52DAP/51DAP1.047690.708
53DAP/52DAP0.939030.715
55DAP/53DAP0.965390.675
57DAP/55DAP0.991150.854
62DAP/57DAP1.365070.35
68DAP/62DAP0.968520.834
68DAP/14DAP0.550110.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.142460.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper6.25897
Mature Green Tomato/Ripe Tomato2.46330.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato6.62178
Mature Eggplant/Ripe Tomato9.381050.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.296021
12-2/M82N/AN/A
12-4/M821.164070.694
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.91399
4-1-1/M82N/AN/A
4-1/M820.86232
4-3-2/M821.076950.508
4-3/M82N/AN/A
5-3/M821.43062
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.31869
7-2/M82N/AN/A
9-3-2/M820.953021

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.70126
IL2-6/WTpooled1.026931
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.03151
IL12-4/WTpooled1.124510.695
IL1-4/WTpooled0.837540.834
WT/WTpooled1.084581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.252870.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993521
DC3000/delta hrp 6h1.74541
DC3000/delta hrp 12h1.046781
DC3000/delta hrp 24h0.99241

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.049030.384
DC3000 delta B/DC3000 delta AB1.164880.243

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.758641
Exp 36h1.320651
Exp 60h0.537830.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980971
Var 0h0.747751
Var 12h I row2-row11.067120.379
Var 12h NI row2-row10.932150.82
Var 36h I row2-row11.144471
Var 36h NI row2-row11.064311
Var 60h I row2-row10.93190.293
Var 60h NI row2-row11.201530.904
Time course 0hI-0hNI1.146670.662
Time course 12hI-12hNI1.046440.746
Time course 36hI-36hNI1.180440.019
Time course 60hI-60hNI2.162970.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.038050.863
transgenic ySAMdc/azygous control (breaker)0.935630.49
transgenic ySAMdc/azygous control (red)1.135620.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.006150.854

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.086621

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.513860.172
Manapal/WT (break)0.759381
Manapal/WT (red)1.415850.413