Expression of 1-1-8.4.6.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.12529 | 0.057 |
27DAP/17DAP | 1.31864 | 0.688 |
39DAP/27DAP | 1.34788 | 0.38 |
41DAP/39DAP | 0.78434 | 0.225 |
42DAP/41DAP | 0.88821 | 0.774 |
43DAP/42DAP | 1.00499 | 0.937 |
47DAP/43DAP | 0.96601 | 0.847 |
52DAP/47DAP | 0.8064 | 0.513 |
57DAP/52DAP | 0.98089 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96002 | 0.476 |
17DAP/reference | 1.19154 | 0.143 |
27DAP/reference | 1.05006 | 0.82 |
39DAP/reference | 1.17806 | 0.149 |
41DAP/reference | 1.19971 | 0.265 |
42DAP/reference | 0.85309 | 0.04 |
43DAP/reference | 1.06739 | 0.899 |
47DAP/reference | 0.94137 | 0.3 |
52DAP/reference | 0.7092 | 0.058 |
57DAP/reference | 0.82329 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98333 | 0.75 |
27DAP/17DAP | 1.03685 | 0.867 |
39DAP/27DAP | 1.02743 | 0.677 |
41DAP/39DAP | 0.95392 | 0.729 |
42DAP/41DAP | 0.98755 | 0.83 |
43DAP/42DAP | 0.97375 | 0.576 |
47DAP/43DAP | 0.98475 | 0.928 |
52DAP/47DAP | 1.03354 | 0.851 |
57DAP/52DAP | 1.00839 | 1 |
57DAP/7DAP | 0.98015 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9727 | 0.402 |
17DAP/reference | 0.96022 | 0.389 |
27DAP/reference | 1.13838 | 0.16 |
39DAP/reference | 1.2038 | 0.007 |
41DAP/reference | 1.04553 | 0.655 |
42DAP/reference | 1.07219 | 0.534 |
43DAP/reference | 1.16991 | 0.07 |
47DAP/reference | 0.92439 | 0.504 |
52DAP/reference | 1.16257 | 0.159 |
57DAP/reference | 1.13173 | 0.5 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19915 | 0.355 |
17DAP/reference | 1.27128 | 0.028 |
27DAP/reference | 0.90437 | 0.292 |
39DAP/reference | 0.88486 | 0.227 |
41DAP/reference | 1.08141 | 1 |
42DAP/reference | 0.83853 | 0.189 |
43DAP/reference | 1.21744 | 0.338 |
47DAP/reference | 0.99671 | 0.714 |
52DAP/reference | 1.0718 | 0.667 |
57DAP/reference | 1.16311 | 0.314 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96013 | 0.362 |
17DAP/reference | 1.01832 | 0.87 |
27DAP/reference | 0.86821 | 0.14 |
39DAP/reference | 1.02225 | 0.691 |
41DAP/reference | 1.06477 | 0.889 |
42DAP/reference | 0.83062 | 0.172 |
43DAP/reference | 0.86063 | 0.267 |
47DAP/reference | 0.97581 | 0.494 |
52DAP/reference | 0.73705 | 0.061 |
57DAP/reference | 0.72003 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01208 | 1 |
26DAP/20DAP | 0.87379 | 0.244 |
34DAP/26DAP | 1.02184 | 1 |
51DAP/34DAP | 0.9419 | 0.667 |
52DAP/51DAP | 1.04769 | 0.708 |
53DAP/52DAP | 0.93903 | 0.715 |
55DAP/53DAP | 0.96539 | 0.675 |
57DAP/55DAP | 0.99115 | 0.854 |
62DAP/57DAP | 1.36507 | 0.35 |
68DAP/62DAP | 0.96852 | 0.834 |
68DAP/14DAP | 0.55011 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14246 | 0.057 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 6.25897 | |
Mature Green Tomato/Ripe Tomato | 2.4633 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 6.62178 | |
Mature Eggplant/Ripe Tomato | 9.38105 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.29602 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.16407 | 0.694 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.91399 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.86232 | |
4-3-2/M82 | 1.07695 | 0.508 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.43062 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.31869 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.95302 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.70126 | |
IL2-6/WTpooled | 1.02693 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.0315 | 1 |
IL12-4/WTpooled | 1.12451 | 0.695 |
IL1-4/WTpooled | 0.83754 | 0.834 |
WT/WTpooled | 1.08458 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.25287 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99352 | 1 |
DC3000/delta hrp 6h | 1.74541 | |
DC3000/delta hrp 12h | 1.04678 | 1 |
DC3000/delta hrp 24h | 0.9924 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04903 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.16488 | 0.243 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.75864 | 1 |
Exp 36h | 1.32065 | 1 |
Exp 60h | 0.53783 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98097 | 1 |
Var 0h | 0.74775 | 1 |
Var 12h I row2-row1 | 1.06712 | 0.379 |
Var 12h NI row2-row1 | 0.93215 | 0.82 |
Var 36h I row2-row1 | 1.14447 | 1 |
Var 36h NI row2-row1 | 1.06431 | 1 |
Var 60h I row2-row1 | 0.9319 | 0.293 |
Var 60h NI row2-row1 | 1.20153 | 0.904 |
Time course 0hI-0hNI | 1.14667 | 0.662 |
Time course 12hI-12hNI | 1.04644 | 0.746 |
Time course 36hI-36hNI | 1.18044 | 0.019 |
Time course 60hI-60hNI | 2.16297 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03805 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.93563 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.13562 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00615 | 0.854 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08662 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.51386 | 0.172 |
Manapal/WT (break) | 0.75938 | 1 |
Manapal/WT (red) | 1.41585 | 0.413 |
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