Expression of 1-1-8.4.6.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.353940.602
27DAP/17DAP0.910380.822
39DAP/27DAP1.023031
41DAP/39DAP1.436640.464
42DAP/41DAP1.306420.481
43DAP/42DAP0.947050.822
47DAP/43DAP1.006930.953
52DAP/47DAP1.516720.346
57DAP/52DAP1.04860.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.198730.32
17DAP/reference1.045190.675
27DAP/reference1.216880.384
39DAP/reference1.208130.209
41DAP/reference1.167570.158
42DAP/reference1.231810.043
43DAP/reference1.092410.36
47DAP/reference1.198920.023
52DAP/reference1.704520.01
57DAP/reference1.414760.027

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.424720.088
27DAP/17DAP0.759110.537
39DAP/27DAP0.894070.405
41DAP/39DAP0.828670.372
42DAP/41DAP0.997460.764
43DAP/42DAP0.693880.034
47DAP/43DAP0.806390.125
52DAP/47DAP0.832470.585
57DAP/52DAP1.080190.869
57DAP/7DAP0.941731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.94210.402
17DAP/reference1.074960.688
27DAP/reference1.293110.01
39DAP/reference1.065180.705
41DAP/reference1.224720.577
42DAP/reference1.116520.534
43DAP/reference1.087620.672
47DAP/reference1.310140.139
52DAP/reference1.025610.679
57DAP/reference1.18020.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.048510.823
17DAP/reference1.224110.186
27DAP/reference1.042450.598
39DAP/reference1.309880.065
41DAP/reference1.180290.353
42DAP/reference1.109340.162
43DAP/reference1.167930.435
47DAP/reference1.201350.069
52DAP/reference1.55060.079
57DAP/reference1.002950.834

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.294330.069
17DAP/reference1.017680.839
27DAP/reference1.368280.033
39DAP/reference1.282730.064
41DAP/reference1.06960.961
42DAP/reference1.451050.194
43DAP/reference1.51930.061
47DAP/reference1.241510.081
52DAP/reference1.042550.908
57DAP/reference1.549690.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.09830.966
26DAP/20DAP0.648380.317
34DAP/26DAP0.892370.627
51DAP/34DAP1.040180.978
52DAP/51DAP0.822860.151
53DAP/52DAP1.024071
55DAP/53DAP0.93130.663
57DAP/55DAP1.25360.906
62DAP/57DAP1.022231
68DAP/62DAP1.493470.778
68DAP/14DAP2.424810.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.826460.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.568240.028
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.69591
Mature Eggplant/Ripe Tomato2.02926

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.03185
1-1-2/M820.916031
12-2/M821.03504
12-4/M820.896271
1-3/M82N/AN/A
2-1-1/M820.82514
2-1/M82N/AN/A
2-6/M820.865741
3-2/M821.124940.967
4-1-1/M821.07502
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.136091
5-3/M820.974251
6-2/M820.96441
6-3/M820.88531
7-1/M821.057161
7-2/M820.91259
9-3-2/M821.22881

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.23602
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.11763
IL7-3/WTpooled0.95344
IL12-4/WTpooled1.478190.523
IL1-4/WTpooled0.70024
WT/WTpooled1.100691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.00461

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.94833
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.835951
DC3000/delta hrp 24h0.453090.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.475810.046
DC3000 delta B/DC3000 delta AB0.554870.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.975760.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.01121
Var 0h0.795620.332
Var 12h I row2-row10.780540.39
Var 12h NI row2-row10.868550.466
Var 36h I row2-row11.109730.908
Var 36h NI row2-row11.339050.276
Var 60h I row2-row11.175840.562
Var 60h NI row2-row11.148760.904
Time course 0hI-0hNI1.050720.63
Time course 12hI-12hNI0.977340.87
Time course 36hI-36hNI0.919610.274
Time course 60hI-60hNI0.099670.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.916460.409
transgenic ySAMdc/azygous control (breaker)0.84580.49
transgenic ySAMdc/azygous control (red)1.130630.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.055650.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.957430.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.531360.413