Expression of 1-1-8.4.6.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.018380.977
27DAP/17DAP1.241060.832
39DAP/27DAP0.793570.449
41DAP/39DAP1.13760.416
42DAP/41DAP1.042781
43DAP/42DAP0.934090.801
47DAP/43DAP1.084490.776
52DAP/47DAP0.953620.772
57DAP/52DAP0.962360.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.973330.578
17DAP/reference0.922060.12
27DAP/reference0.906370.134
39DAP/reference0.962420.527
41DAP/reference0.86220.154
42DAP/reference0.793220.037
43DAP/reference0.950450.5
47DAP/reference1.090391
52DAP/reference1.01190.689
57DAP/reference1.153780.127

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.044741
27DAP/17DAP1.040210.98
39DAP/27DAP1.225070.388
41DAP/39DAP1.034041
42DAP/41DAP1.096850.783
43DAP/42DAP1.020750.991
47DAP/43DAP0.986950.928
52DAP/47DAP0.963120.868
57DAP/52DAP0.993670.838
57DAP/7DAP0.864971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.995850.682
17DAP/reference1.325880.077
27DAP/reference1.114540.804
39DAP/reference1.071961
41DAP/reference1.131390.207
42DAP/reference1.165610.686
43DAP/reference1.257280.087
47DAP/reference0.910110.383
52DAP/reference0.921970.196
57DAP/reference1.235880.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.840710.204
17DAP/reference0.911050.201
27DAP/reference0.931010.327
39DAP/reference1.105890.514
41DAP/reference0.94860.348
42DAP/reference0.955960.355
43DAP/reference1.033240.745
47DAP/reference0.89870.081
52DAP/reference0.920240.259
57DAP/reference0.83570.013

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.055950.963
17DAP/reference0.945510.47
27DAP/reference1.139980.487
39DAP/reference1.102110.203
41DAP/reference1.028691
42DAP/reference0.848260.552
43DAP/reference1.114080.867
47DAP/reference0.948770.383
52DAP/reference1.350460.237
57DAP/reference0.920240.258

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.027950.966
26DAP/20DAP0.848210.228
34DAP/26DAP1.152111
51DAP/34DAP1.206220.666
52DAP/51DAP1.088430.467
53DAP/52DAP1.072060.783
55DAP/53DAP1.158860.075
57DAP/55DAP1.139230.61
62DAP/57DAP1.078881
68DAP/62DAP1.021190.939
68DAP/14DAP1.323750.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.899420.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.671480.203
Mature Green Tomato/Ripe Tomato0.856760.226
Immature Eggplant/Mature Eggplant1.49480.05
Ripe Pepper/Ripe Tomato3.942950.251
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.074921
1-1-2/M820.937371
12-2/M821.217511
12-4/M821.03334
1-3/M820.99921
2-1-1/M821.095320.764
2-1/M821.25372
2-6/M820.942981
3-2/M820.831780.44
4-1-1/M821.023711
4-1/M821.00882
4-3-2/M821.09243
4-3/M820.961711
5-3/M821.013651
6-2/M820.963031
6-3/M820.961941
7-1/M820.998641
7-2/M820.974311
9-3-2/M821.091

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.95631
IL2-6/WTpooled1.453910.419
IL7-5/WTpooled1.013261
IL7-3/WTpooled1.980341
IL12-4/WTpooled1.042381
IL1-4/WTpooled1.198311
WT/WTpooled0.928311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.996341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.965461
DC3000/delta hrp 6h1.053441
DC3000/delta hrp 12h0.88881
DC3000/delta hrp 24h0.999031

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.076020.694

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.798090.24
Exp 36h1.380450.349
Exp 60h1.227811

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988241
Var 0h1.064230.594
Var 12h I row2-row11.214390.235
Var 12h NI row2-row10.842830.627
Var 36h I row2-row10.873430.805
Var 36h NI row2-row10.991681
Var 60h I row2-row11.178610.562
Var 60h NI row2-row11.119110.904
Time course 0hI-0hNI1.144230.486
Time course 12hI-12hNI1.088370.572
Time course 36hI-36hNI1.044010.881
Time course 60hI-60hNI1.269760.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.096260.294
transgenic ySAMdc/azygous control (breaker)1.78950.166
transgenic ySAMdc/azygous control (red)0.999761

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980610.393

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.059021

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.737741
Manapal/WT (break)0.728780.333
Manapal/WT (red)0.649190.184