Expression of 1-1-8.4.6.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01838 | 0.977 |
27DAP/17DAP | 1.24106 | 0.832 |
39DAP/27DAP | 0.79357 | 0.449 |
41DAP/39DAP | 1.1376 | 0.416 |
42DAP/41DAP | 1.04278 | 1 |
43DAP/42DAP | 0.93409 | 0.801 |
47DAP/43DAP | 1.08449 | 0.776 |
52DAP/47DAP | 0.95362 | 0.772 |
57DAP/52DAP | 0.96236 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97333 | 0.578 |
17DAP/reference | 0.92206 | 0.12 |
27DAP/reference | 0.90637 | 0.134 |
39DAP/reference | 0.96242 | 0.527 |
41DAP/reference | 0.8622 | 0.154 |
42DAP/reference | 0.79322 | 0.037 |
43DAP/reference | 0.95045 | 0.5 |
47DAP/reference | 1.09039 | 1 |
52DAP/reference | 1.0119 | 0.689 |
57DAP/reference | 1.15378 | 0.127 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04474 | 1 |
27DAP/17DAP | 1.04021 | 0.98 |
39DAP/27DAP | 1.22507 | 0.388 |
41DAP/39DAP | 1.03404 | 1 |
42DAP/41DAP | 1.09685 | 0.783 |
43DAP/42DAP | 1.02075 | 0.991 |
47DAP/43DAP | 0.98695 | 0.928 |
52DAP/47DAP | 0.96312 | 0.868 |
57DAP/52DAP | 0.99367 | 0.838 |
57DAP/7DAP | 0.86497 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99585 | 0.682 |
17DAP/reference | 1.32588 | 0.077 |
27DAP/reference | 1.11454 | 0.804 |
39DAP/reference | 1.07196 | 1 |
41DAP/reference | 1.13139 | 0.207 |
42DAP/reference | 1.16561 | 0.686 |
43DAP/reference | 1.25728 | 0.087 |
47DAP/reference | 0.91011 | 0.383 |
52DAP/reference | 0.92197 | 0.196 |
57DAP/reference | 1.23588 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84071 | 0.204 |
17DAP/reference | 0.91105 | 0.201 |
27DAP/reference | 0.93101 | 0.327 |
39DAP/reference | 1.10589 | 0.514 |
41DAP/reference | 0.9486 | 0.348 |
42DAP/reference | 0.95596 | 0.355 |
43DAP/reference | 1.03324 | 0.745 |
47DAP/reference | 0.8987 | 0.081 |
52DAP/reference | 0.92024 | 0.259 |
57DAP/reference | 0.8357 | 0.013 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05595 | 0.963 |
17DAP/reference | 0.94551 | 0.47 |
27DAP/reference | 1.13998 | 0.487 |
39DAP/reference | 1.10211 | 0.203 |
41DAP/reference | 1.02869 | 1 |
42DAP/reference | 0.84826 | 0.552 |
43DAP/reference | 1.11408 | 0.867 |
47DAP/reference | 0.94877 | 0.383 |
52DAP/reference | 1.35046 | 0.237 |
57DAP/reference | 0.92024 | 0.258 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02795 | 0.966 |
26DAP/20DAP | 0.84821 | 0.228 |
34DAP/26DAP | 1.15211 | 1 |
51DAP/34DAP | 1.20622 | 0.666 |
52DAP/51DAP | 1.08843 | 0.467 |
53DAP/52DAP | 1.07206 | 0.783 |
55DAP/53DAP | 1.15886 | 0.075 |
57DAP/55DAP | 1.13923 | 0.61 |
62DAP/57DAP | 1.07888 | 1 |
68DAP/62DAP | 1.02119 | 0.939 |
68DAP/14DAP | 1.32375 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89942 | 0.322 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67148 | 0.203 |
Mature Green Tomato/Ripe Tomato | 0.85676 | 0.226 |
Immature Eggplant/Mature Eggplant | 1.4948 | 0.05 |
Ripe Pepper/Ripe Tomato | 3.94295 | 0.251 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07492 | 1 |
1-1-2/M82 | 0.93737 | 1 |
12-2/M82 | 1.21751 | 1 |
12-4/M82 | 1.03334 | |
1-3/M82 | 0.9992 | 1 |
2-1-1/M82 | 1.09532 | 0.764 |
2-1/M82 | 1.25372 | |
2-6/M82 | 0.94298 | 1 |
3-2/M82 | 0.83178 | 0.44 |
4-1-1/M82 | 1.02371 | 1 |
4-1/M82 | 1.00882 | |
4-3-2/M82 | 1.09243 | |
4-3/M82 | 0.96171 | 1 |
5-3/M82 | 1.01365 | 1 |
6-2/M82 | 0.96303 | 1 |
6-3/M82 | 0.96194 | 1 |
7-1/M82 | 0.99864 | 1 |
7-2/M82 | 0.97431 | 1 |
9-3-2/M82 | 1.091 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9563 | 1 |
IL2-6/WTpooled | 1.45391 | 0.419 |
IL7-5/WTpooled | 1.01326 | 1 |
IL7-3/WTpooled | 1.98034 | 1 |
IL12-4/WTpooled | 1.04238 | 1 |
IL1-4/WTpooled | 1.19831 | 1 |
WT/WTpooled | 0.92831 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99634 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96546 | 1 |
DC3000/delta hrp 6h | 1.05344 | 1 |
DC3000/delta hrp 12h | 0.8888 | 1 |
DC3000/delta hrp 24h | 0.99903 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.07602 | 0.694 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.79809 | 0.24 |
Exp 36h | 1.38045 | 0.349 |
Exp 60h | 1.22781 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98824 | 1 |
Var 0h | 1.06423 | 0.594 |
Var 12h I row2-row1 | 1.21439 | 0.235 |
Var 12h NI row2-row1 | 0.84283 | 0.627 |
Var 36h I row2-row1 | 0.87343 | 0.805 |
Var 36h NI row2-row1 | 0.99168 | 1 |
Var 60h I row2-row1 | 1.17861 | 0.562 |
Var 60h NI row2-row1 | 1.11911 | 0.904 |
Time course 0hI-0hNI | 1.14423 | 0.486 |
Time course 12hI-12hNI | 1.08837 | 0.572 |
Time course 36hI-36hNI | 1.04401 | 0.881 |
Time course 60hI-60hNI | 1.26976 | 0.029 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09626 | 0.294 |
transgenic ySAMdc/azygous control (breaker) | 1.7895 | 0.166 |
transgenic ySAMdc/azygous control (red) | 0.99976 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98061 | 0.393 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.05902 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73774 | 1 |
Manapal/WT (break) | 0.72878 | 0.333 |
Manapal/WT (red) | 0.64919 | 0.184 |
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