Expression of 1-1-8.4.7.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.323390.977
27DAP/17DAP0.958770.902
39DAP/27DAP8.723730.026
41DAP/39DAP1.144680.949
42DAP/41DAP1.003831
43DAP/42DAP1.951630.906
47DAP/43DAP0.431360.049
52DAP/47DAP0.649880.091
57DAP/52DAP1.12381

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.630650.252
17DAP/reference0.532990.011
27DAP/reference0.3750.011
39DAP/reference0.923260.315
41DAP/reference0.502060.014
42DAP/reference2.835820.001
43DAP/reference3.193410.007
47DAP/reference1.588060.048
52DAP/reference0.354640.012
57DAP/reference1.172570.767

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.151930.028
27DAP/17DAP2.368120.023
39DAP/27DAP4.87690.023
41DAP/39DAP3.300760.656
42DAP/41DAP1.254230.719
43DAP/42DAP1.345860.134
47DAP/43DAP1.409330.09
52DAP/47DAP0.5730.054
57DAP/52DAP0.948990.657
57DAP/7DAP1.37691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.323820.024
17DAP/reference1.102780.244
27DAP/reference2.274530.006
39DAP/reference1.758040.012
41DAP/reference2.024490.025
42DAP/reference3.615650.006
43DAP/reference3.619060.006
47DAP/reference5.694510.014
52DAP/reference4.182840.007
57DAP/reference1.810610.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.278570.397
17DAP/reference0.50350.004
27DAP/reference1.844870.023
39DAP/reference1.170560.213
41DAP/reference0.810580.04
42DAP/reference1.345350.105
43DAP/reference1.049110.361
47DAP/reference2.691560.067
52DAP/reference0.446130.004
57DAP/reference1.309920.552

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.157330.03
17DAP/reference0.685120.128
27DAP/reference1.356070.078
39DAP/reference2.445120.004
41DAP/reference1.623780.007
42DAP/reference3.517460.006
43DAP/reference3.922170.006
47DAP/reference1.307890.251
52DAP/reference1.814670.072
57DAP/reference0.374340.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.388840.966
26DAP/20DAP1.382410.212
34DAP/26DAP0.893580.584
51DAP/34DAP1.008010.967
52DAP/51DAP1.464990.05
53DAP/52DAP1.177880.882
55DAP/53DAP1.31330.733
57DAP/55DAP0.876390.545
62DAP/57DAP0.775880.681
68DAP/62DAP1.430630.069
68DAP/14DAP0.962591

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker23.37460.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper10.06440.075
Mature Green Tomato/Ripe Tomato0.705360.055
Immature Eggplant/Mature Eggplant41.31160.032
Ripe Pepper/Ripe Tomato0.129010.224
Mature Eggplant/Ripe Tomato0.332371

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.300390.418
1-1-2/M821.942061
12-2/M820.860340.955
12-4/M821.987261
1-3/M822.937511
2-1-1/M821.11856
2-1/M821.266971
2-6/M821.629840.339
3-2/M821.12970.717
4-1-1/M821.24711
4-1/M823.275721
4-3-2/M822.687580.246
4-3/M821.200770.268
5-3/M820.911811
6-2/M822.288691
6-3/M821.091671
7-1/M820.966310.803
7-2/M821.052031
9-3-2/M822.836681

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.0840.493
IL2-6/WTpooled0.841120.473
IL7-5/WTpooled1.476430.722
IL7-3/WTpooled0.969731
IL12-4/WTpooled0.836761
IL1-4/WTpooled0.862780.415
WT/WTpooled1.004381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.782371

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.008081
DC3000/delta hrp 6h1.057871
DC3000/delta hrp 12h0.813581
DC3000/delta hrp 24h3.191310.019

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB3.723050.042
DC3000 delta B/DC3000 delta AB3.901510.023

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.741460.254
Exp 36h2.633330.326
Exp 60h3.76640.18

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.059921
Var 0h0.761231
Var 12h I row2-row11.295720.296
Var 12h NI row2-row11.889710.235
Var 36h I row2-row11.542570.298
Var 36h NI row2-row10.699430.549
Var 60h I row2-row10.891550.439
Var 60h NI row2-row10.583720.292
Time course 0hI-0hNI1.173650.662
Time course 12hI-12hNI3.11160.005
Time course 36hI-36hNI7.350280.004
Time course 60hI-60hNI15.64670.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.681580.278
transgenic ySAMdc/azygous control (breaker)1.124250.178
transgenic ySAMdc/azygous control (red)1.254540.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.034730.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.410230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.534121
Manapal/WT (break)1.012211
Manapal/WT (red)1.028311