Expression of 1-1-8.4.7.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.32339 | 0.977 |
27DAP/17DAP | 0.95877 | 0.902 |
39DAP/27DAP | 8.72373 | 0.026 |
41DAP/39DAP | 1.14468 | 0.949 |
42DAP/41DAP | 1.00383 | 1 |
43DAP/42DAP | 1.95163 | 0.906 |
47DAP/43DAP | 0.43136 | 0.049 |
52DAP/47DAP | 0.64988 | 0.091 |
57DAP/52DAP | 1.1238 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63065 | 0.252 |
17DAP/reference | 0.53299 | 0.011 |
27DAP/reference | 0.375 | 0.011 |
39DAP/reference | 0.92326 | 0.315 |
41DAP/reference | 0.50206 | 0.014 |
42DAP/reference | 2.83582 | 0.001 |
43DAP/reference | 3.19341 | 0.007 |
47DAP/reference | 1.58806 | 0.048 |
52DAP/reference | 0.35464 | 0.012 |
57DAP/reference | 1.17257 | 0.767 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.15193 | 0.028 |
27DAP/17DAP | 2.36812 | 0.023 |
39DAP/27DAP | 4.8769 | 0.023 |
41DAP/39DAP | 3.30076 | 0.656 |
42DAP/41DAP | 1.25423 | 0.719 |
43DAP/42DAP | 1.34586 | 0.134 |
47DAP/43DAP | 1.40933 | 0.09 |
52DAP/47DAP | 0.573 | 0.054 |
57DAP/52DAP | 0.94899 | 0.657 |
57DAP/7DAP | 1.3769 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.32382 | 0.024 |
17DAP/reference | 1.10278 | 0.244 |
27DAP/reference | 2.27453 | 0.006 |
39DAP/reference | 1.75804 | 0.012 |
41DAP/reference | 2.02449 | 0.025 |
42DAP/reference | 3.61565 | 0.006 |
43DAP/reference | 3.61906 | 0.006 |
47DAP/reference | 5.69451 | 0.014 |
52DAP/reference | 4.18284 | 0.007 |
57DAP/reference | 1.81061 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27857 | 0.397 |
17DAP/reference | 0.5035 | 0.004 |
27DAP/reference | 1.84487 | 0.023 |
39DAP/reference | 1.17056 | 0.213 |
41DAP/reference | 0.81058 | 0.04 |
42DAP/reference | 1.34535 | 0.105 |
43DAP/reference | 1.04911 | 0.361 |
47DAP/reference | 2.69156 | 0.067 |
52DAP/reference | 0.44613 | 0.004 |
57DAP/reference | 1.30992 | 0.552 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.15733 | 0.03 |
17DAP/reference | 0.68512 | 0.128 |
27DAP/reference | 1.35607 | 0.078 |
39DAP/reference | 2.44512 | 0.004 |
41DAP/reference | 1.62378 | 0.007 |
42DAP/reference | 3.51746 | 0.006 |
43DAP/reference | 3.92217 | 0.006 |
47DAP/reference | 1.30789 | 0.251 |
52DAP/reference | 1.81467 | 0.072 |
57DAP/reference | 0.37434 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.38884 | 0.966 |
26DAP/20DAP | 1.38241 | 0.212 |
34DAP/26DAP | 0.89358 | 0.584 |
51DAP/34DAP | 1.00801 | 0.967 |
52DAP/51DAP | 1.46499 | 0.05 |
53DAP/52DAP | 1.17788 | 0.882 |
55DAP/53DAP | 1.3133 | 0.733 |
57DAP/55DAP | 0.87639 | 0.545 |
62DAP/57DAP | 0.77588 | 0.681 |
68DAP/62DAP | 1.43063 | 0.069 |
68DAP/14DAP | 0.96259 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 23.3746 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 10.0644 | 0.075 |
Mature Green Tomato/Ripe Tomato | 0.70536 | 0.055 |
Immature Eggplant/Mature Eggplant | 41.3116 | 0.032 |
Ripe Pepper/Ripe Tomato | 0.12901 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.33237 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.30039 | 0.418 |
1-1-2/M82 | 1.94206 | 1 |
12-2/M82 | 0.86034 | 0.955 |
12-4/M82 | 1.98726 | 1 |
1-3/M82 | 2.93751 | 1 |
2-1-1/M82 | 1.11856 | |
2-1/M82 | 1.26697 | 1 |
2-6/M82 | 1.62984 | 0.339 |
3-2/M82 | 1.1297 | 0.717 |
4-1-1/M82 | 1.2471 | 1 |
4-1/M82 | 3.27572 | 1 |
4-3-2/M82 | 2.68758 | 0.246 |
4-3/M82 | 1.20077 | 0.268 |
5-3/M82 | 0.91181 | 1 |
6-2/M82 | 2.28869 | 1 |
6-3/M82 | 1.09167 | 1 |
7-1/M82 | 0.96631 | 0.803 |
7-2/M82 | 1.05203 | 1 |
9-3-2/M82 | 2.83668 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.084 | 0.493 |
IL2-6/WTpooled | 0.84112 | 0.473 |
IL7-5/WTpooled | 1.47643 | 0.722 |
IL7-3/WTpooled | 0.96973 | 1 |
IL12-4/WTpooled | 0.83676 | 1 |
IL1-4/WTpooled | 0.86278 | 0.415 |
WT/WTpooled | 1.00438 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.78237 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00808 | 1 |
DC3000/delta hrp 6h | 1.05787 | 1 |
DC3000/delta hrp 12h | 0.81358 | 1 |
DC3000/delta hrp 24h | 3.19131 | 0.019 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 3.72305 | 0.042 |
DC3000 delta B/DC3000 delta AB | 3.90151 | 0.023 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.74146 | 0.254 |
Exp 36h | 2.63333 | 0.326 |
Exp 60h | 3.7664 | 0.18 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05992 | 1 |
Var 0h | 0.76123 | 1 |
Var 12h I row2-row1 | 1.29572 | 0.296 |
Var 12h NI row2-row1 | 1.88971 | 0.235 |
Var 36h I row2-row1 | 1.54257 | 0.298 |
Var 36h NI row2-row1 | 0.69943 | 0.549 |
Var 60h I row2-row1 | 0.89155 | 0.439 |
Var 60h NI row2-row1 | 0.58372 | 0.292 |
Time course 0hI-0hNI | 1.17365 | 0.662 |
Time course 12hI-12hNI | 3.1116 | 0.005 |
Time course 36hI-36hNI | 7.35028 | 0.004 |
Time course 60hI-60hNI | 15.6467 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.68158 | 0.278 |
transgenic ySAMdc/azygous control (breaker) | 1.12425 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.25454 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03473 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.41023 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.53412 | 1 |
Manapal/WT (break) | 1.01221 | 1 |
Manapal/WT (red) | 1.02831 | 1 |
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