Expression of 1-1-8.4.7.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.967010.77
27DAP/17DAP1.224510.905
39DAP/27DAP2.269560.087
41DAP/39DAP0.859420.499
42DAP/41DAP1.428350.679
43DAP/42DAP0.889830.801
47DAP/43DAP0.689150.2
52DAP/47DAP0.658180.359
57DAP/52DAP1.075290.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.986050.616
17DAP/reference0.938670.224
27DAP/reference0.944010.045
39DAP/reference1.031690.301
41DAP/reference0.864750.267
42DAP/reference1.074630.055
43DAP/reference1.007890.924
47DAP/reference1.158670.01
52DAP/reference1.071910.951
57DAP/reference1.100640.076

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.162680.319
27DAP/17DAP0.966720.878
39DAP/27DAP0.916940.594
41DAP/39DAP1.003321
42DAP/41DAP1.140340.708
43DAP/42DAP0.891440.216
47DAP/43DAP1.014531
52DAP/47DAP1.191970.593
57DAP/52DAP1.231310.407
57DAP/7DAP0.808681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.081880.385
17DAP/reference0.986070.338
27DAP/reference1.084740.107
39DAP/reference1.055350.027
41DAP/reference0.991250.677
42DAP/reference0.933860.073
43DAP/reference1.008260.802
47DAP/reference1.275020.017
52DAP/reference1.072430.428
57DAP/reference1.019111

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036630.794
17DAP/reference1.016440.904
27DAP/reference1.214560.087
39DAP/reference1.019110.935
41DAP/reference0.973840.481
42DAP/reference1.005821
43DAP/reference0.999570.846
47DAP/reference1.057760.301
52DAP/reference0.953860.239
57DAP/reference1.017840.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.989390.653
17DAP/reference0.949670.452
27DAP/reference1.014020.934
39DAP/reference1.085980.254
41DAP/reference1.080970.134
42DAP/reference1.159610.039
43DAP/reference1.142330.186
47DAP/reference0.944070.306
52DAP/reference1.138760.228
57DAP/reference1.538060.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.999661
26DAP/20DAP1.112440.855
34DAP/26DAP1.281671
51DAP/34DAP1.332320.232
52DAP/51DAP1.345260.067
53DAP/52DAP0.953270.758
55DAP/53DAP1.132760.855
57DAP/55DAP0.783110.133
62DAP/57DAP0.857030.466
68DAP/62DAP1.277030.448
68DAP/14DAP1.18610.487

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.895920.304

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.985850.805
Mature Green Tomato/Ripe Tomato0.91444
Immature Eggplant/Mature Eggplant1.395150.05
Ripe Pepper/Ripe Tomato1.145131
Mature Eggplant/Ripe Tomato0.991161

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.006371
1-1-2/M821.014511
12-2/M821.000021
12-4/M820.965510.619
1-3/M821.176920.479
2-1-1/M820.938650.465
2-1/M821.008831
2-6/M820.964151
3-2/M820.98803
4-1-1/M820.860820.668
4-1/M820.85974
4-3-2/M821.04925
4-3/M820.961890.72
5-3/M820.98371
6-2/M820.96871
6-3/M821.001271
7-1/M820.987261
7-2/M820.988481
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.938911
IL2-6/WTpooled1.13220.456
IL7-5/WTpooled1.04331
IL7-3/WTpooled1.203241
IL12-4/WTpooled1.116140.646
IL1-4/WTpooled0.9320.394
WT/WTpooled0.986361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.729070.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.988661
DC3000/delta hrp 6h0.954910.95
DC3000/delta hrp 12h0.962411
DC3000/delta hrp 24h1.067180.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.844950.213
DC3000 delta B/DC3000 delta AB0.992691

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988561
Var 0h0.83151
Var 12h I row2-row10.87140.363
Var 12h NI row2-row10.950230.82
Var 36h I row2-row11.124080.309
Var 36h NI row2-row11.229531
Var 60h I row2-row10.772870.293
Var 60h NI row2-row10.910881
Time course 0hI-0hNI0.970030.852
Time course 12hI-12hNI0.995881
Time course 36hI-36hNI1.10590.089
Time course 60hI-60hNI0.896070.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.897570.32
transgenic ySAMdc/azygous control (breaker)1.107571
transgenic ySAMdc/azygous control (red)1.156660.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.021450.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.616980.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.868611
Manapal/WT (break)1.001891
Manapal/WT (red)1.038790.413