Expression of 1-1-8.4.7.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96701 | 0.77 |
27DAP/17DAP | 1.22451 | 0.905 |
39DAP/27DAP | 2.26956 | 0.087 |
41DAP/39DAP | 0.85942 | 0.499 |
42DAP/41DAP | 1.42835 | 0.679 |
43DAP/42DAP | 0.88983 | 0.801 |
47DAP/43DAP | 0.68915 | 0.2 |
52DAP/47DAP | 0.65818 | 0.359 |
57DAP/52DAP | 1.07529 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98605 | 0.616 |
17DAP/reference | 0.93867 | 0.224 |
27DAP/reference | 0.94401 | 0.045 |
39DAP/reference | 1.03169 | 0.301 |
41DAP/reference | 0.86475 | 0.267 |
42DAP/reference | 1.07463 | 0.055 |
43DAP/reference | 1.00789 | 0.924 |
47DAP/reference | 1.15867 | 0.01 |
52DAP/reference | 1.07191 | 0.951 |
57DAP/reference | 1.10064 | 0.076 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16268 | 0.319 |
27DAP/17DAP | 0.96672 | 0.878 |
39DAP/27DAP | 0.91694 | 0.594 |
41DAP/39DAP | 1.00332 | 1 |
42DAP/41DAP | 1.14034 | 0.708 |
43DAP/42DAP | 0.89144 | 0.216 |
47DAP/43DAP | 1.01453 | 1 |
52DAP/47DAP | 1.19197 | 0.593 |
57DAP/52DAP | 1.23131 | 0.407 |
57DAP/7DAP | 0.80868 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08188 | 0.385 |
17DAP/reference | 0.98607 | 0.338 |
27DAP/reference | 1.08474 | 0.107 |
39DAP/reference | 1.05535 | 0.027 |
41DAP/reference | 0.99125 | 0.677 |
42DAP/reference | 0.93386 | 0.073 |
43DAP/reference | 1.00826 | 0.802 |
47DAP/reference | 1.27502 | 0.017 |
52DAP/reference | 1.07243 | 0.428 |
57DAP/reference | 1.01911 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03663 | 0.794 |
17DAP/reference | 1.01644 | 0.904 |
27DAP/reference | 1.21456 | 0.087 |
39DAP/reference | 1.01911 | 0.935 |
41DAP/reference | 0.97384 | 0.481 |
42DAP/reference | 1.00582 | 1 |
43DAP/reference | 0.99957 | 0.846 |
47DAP/reference | 1.05776 | 0.301 |
52DAP/reference | 0.95386 | 0.239 |
57DAP/reference | 1.01784 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98939 | 0.653 |
17DAP/reference | 0.94967 | 0.452 |
27DAP/reference | 1.01402 | 0.934 |
39DAP/reference | 1.08598 | 0.254 |
41DAP/reference | 1.08097 | 0.134 |
42DAP/reference | 1.15961 | 0.039 |
43DAP/reference | 1.14233 | 0.186 |
47DAP/reference | 0.94407 | 0.306 |
52DAP/reference | 1.13876 | 0.228 |
57DAP/reference | 1.53806 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99966 | 1 |
26DAP/20DAP | 1.11244 | 0.855 |
34DAP/26DAP | 1.28167 | 1 |
51DAP/34DAP | 1.33232 | 0.232 |
52DAP/51DAP | 1.34526 | 0.067 |
53DAP/52DAP | 0.95327 | 0.758 |
55DAP/53DAP | 1.13276 | 0.855 |
57DAP/55DAP | 0.78311 | 0.133 |
62DAP/57DAP | 0.85703 | 0.466 |
68DAP/62DAP | 1.27703 | 0.448 |
68DAP/14DAP | 1.1861 | 0.487 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89592 | 0.304 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98585 | 0.805 |
Mature Green Tomato/Ripe Tomato | 0.91444 | |
Immature Eggplant/Mature Eggplant | 1.39515 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.14513 | 1 |
Mature Eggplant/Ripe Tomato | 0.99116 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00637 | 1 |
1-1-2/M82 | 1.01451 | 1 |
12-2/M82 | 1.00002 | 1 |
12-4/M82 | 0.96551 | 0.619 |
1-3/M82 | 1.17692 | 0.479 |
2-1-1/M82 | 0.93865 | 0.465 |
2-1/M82 | 1.00883 | 1 |
2-6/M82 | 0.96415 | 1 |
3-2/M82 | 0.98803 | |
4-1-1/M82 | 0.86082 | 0.668 |
4-1/M82 | 0.85974 | |
4-3-2/M82 | 1.04925 | |
4-3/M82 | 0.96189 | 0.72 |
5-3/M82 | 0.9837 | 1 |
6-2/M82 | 0.9687 | 1 |
6-3/M82 | 1.00127 | 1 |
7-1/M82 | 0.98726 | 1 |
7-2/M82 | 0.98848 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93891 | 1 |
IL2-6/WTpooled | 1.1322 | 0.456 |
IL7-5/WTpooled | 1.0433 | 1 |
IL7-3/WTpooled | 1.20324 | 1 |
IL12-4/WTpooled | 1.11614 | 0.646 |
IL1-4/WTpooled | 0.932 | 0.394 |
WT/WTpooled | 0.98636 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.72907 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98866 | 1 |
DC3000/delta hrp 6h | 0.95491 | 0.95 |
DC3000/delta hrp 12h | 0.96241 | 1 |
DC3000/delta hrp 24h | 1.06718 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.84495 | 0.213 |
DC3000 delta B/DC3000 delta AB | 0.99269 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98856 | 1 |
Var 0h | 0.8315 | 1 |
Var 12h I row2-row1 | 0.8714 | 0.363 |
Var 12h NI row2-row1 | 0.95023 | 0.82 |
Var 36h I row2-row1 | 1.12408 | 0.309 |
Var 36h NI row2-row1 | 1.22953 | 1 |
Var 60h I row2-row1 | 0.77287 | 0.293 |
Var 60h NI row2-row1 | 0.91088 | 1 |
Time course 0hI-0hNI | 0.97003 | 0.852 |
Time course 12hI-12hNI | 0.99588 | 1 |
Time course 36hI-36hNI | 1.1059 | 0.089 |
Time course 60hI-60hNI | 0.89607 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89757 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 1.10757 | 1 |
transgenic ySAMdc/azygous control (red) | 1.15666 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02145 | 0.656 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.61698 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86861 | 1 |
Manapal/WT (break) | 1.00189 | 1 |
Manapal/WT (red) | 1.03879 | 0.413 |
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