Expression of 1-1-8.4.7.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16745 | 0.755 |
27DAP/17DAP | 1.2795 | 0.744 |
39DAP/27DAP | 1.0233 | 0.876 |
41DAP/39DAP | 0.98763 | 0.815 |
42DAP/41DAP | 1.01542 | 1 |
43DAP/42DAP | 1.04817 | 1 |
47DAP/43DAP | 1.20014 | 0.415 |
52DAP/47DAP | 0.86568 | 0.626 |
57DAP/52DAP | 0.87932 | 0.803 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92668 | 0.293 |
17DAP/reference | 1.04059 | 0.565 |
27DAP/reference | 1.00591 | 1 |
39DAP/reference | 1.02157 | 0.889 |
41DAP/reference | 0.92831 | 0.542 |
42DAP/reference | 0.9817 | 0.348 |
43DAP/reference | 1.13518 | 0.074 |
47DAP/reference | 1.07558 | 0.048 |
52DAP/reference | 0.96669 | 0.371 |
57DAP/reference | 1.04046 | 0.829 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09045 | 0.356 |
27DAP/17DAP | 0.9015 | 0.418 |
39DAP/27DAP | 0.95464 | 0.45 |
41DAP/39DAP | 1.04107 | 0.895 |
42DAP/41DAP | 1.17726 | 0.032 |
43DAP/42DAP | 0.87966 | 0.052 |
47DAP/43DAP | 0.90154 | 0.225 |
52DAP/47DAP | 1.57714 | 0.106 |
57DAP/52DAP | 1.56903 | 0.073 |
57DAP/7DAP | 1.34144 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86395 | 0.146 |
17DAP/reference | 1.1146 | 0.361 |
27DAP/reference | 1.03778 | 0.664 |
39DAP/reference | 0.95719 | 0.307 |
41DAP/reference | 1.30936 | 0.017 |
42DAP/reference | 1.09799 | 0.405 |
43DAP/reference | 1.03095 | 0.83 |
47DAP/reference | 1.00067 | 1 |
52DAP/reference | 1.15735 | 0.247 |
57DAP/reference | 1.11149 | 0.288 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87114 | 0.152 |
17DAP/reference | 0.89788 | 0.058 |
27DAP/reference | 0.8899 | 0.173 |
39DAP/reference | 0.9685 | 0.359 |
41DAP/reference | 0.99776 | 0.666 |
42DAP/reference | 0.96489 | 0.261 |
43DAP/reference | 0.83826 | 0.095 |
47DAP/reference | 0.9772 | 0.338 |
52DAP/reference | 0.94531 | 0.203 |
57DAP/reference | 0.8789 | 0.099 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96475 | 0.422 |
17DAP/reference | 0.94367 | 0.462 |
27DAP/reference | 0.98924 | 0.657 |
39DAP/reference | 0.98918 | 0.693 |
41DAP/reference | 1.17602 | 0.058 |
42DAP/reference | 0.99398 | 0.816 |
43DAP/reference | 1.13187 | 0.465 |
47DAP/reference | 0.8951 | 0.048 |
52DAP/reference | 1.0004 | 0.854 |
57DAP/reference | 1.0287 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91536 | 0.981 |
26DAP/20DAP | 1.03409 | 1 |
34DAP/26DAP | 1.45324 | 0.819 |
51DAP/34DAP | 1.08921 | 1 |
52DAP/51DAP | 2.46216 | 0.034 |
53DAP/52DAP | 0.69739 | 0.049 |
55DAP/53DAP | 1.47162 | 0.04 |
57DAP/55DAP | 0.65573 | 0.091 |
62DAP/57DAP | 1.07281 | 0.902 |
68DAP/62DAP | 1.26575 | 0.813 |
68DAP/14DAP | 1.07951 | 0.802 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.4209 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.64758 | 0.197 |
Mature Green Tomato/Ripe Tomato | 0.91483 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.39245 | 0.074 |
Ripe Pepper/Ripe Tomato | 1.66371 | 1 |
Mature Eggplant/Ripe Tomato | 1.46583 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.27015 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.88251 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.28049 | 0.277 |
IL2-6/WTpooled | 0.8311 | 0.473 |
IL7-5/WTpooled | 1.06176 | 0.792 |
IL7-3/WTpooled | 1.08617 | 1 |
IL12-4/WTpooled | 0.99578 | 1 |
IL1-4/WTpooled | 0.95562 | 0.699 |
WT/WTpooled | 0.98216 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85507 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.26948 | |
DC3000/delta hrp 6h | 0.99777 | 0.95 |
DC3000/delta hrp 12h | 1.07634 | 1 |
DC3000/delta hrp 24h | 1.07305 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.50677 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.46231 | 0.123 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01677 | 1 |
Var 0h | 0.80874 | 0.98 |
Var 12h I row2-row1 | 0.79963 | 0.467 |
Var 12h NI row2-row1 | 0.97693 | 0.906 |
Var 36h I row2-row1 | 0.94543 | 1 |
Var 36h NI row2-row1 | 1.29125 | 0.229 |
Var 60h I row2-row1 | 0.78071 | 0.285 |
Var 60h NI row2-row1 | 0.99028 | 1 |
Time course 0hI-0hNI | 0.90761 | 0.446 |
Time course 12hI-12hNI | 1.03218 | 0.876 |
Time course 36hI-36hNI | 1.00209 | 0.742 |
Time course 60hI-60hNI | 1.57239 | 0.015 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06705 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.06956 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.09272 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11528 | 0.148 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.37262 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.61472 | 0.084 |
Manapal/WT (break) | 1.54009 | 0.123 |
Manapal/WT (red) | 1.42025 | 0.142 |
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