Expression of 1-1-8.4.8.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949630.586
27DAP/17DAP0.880730.72
39DAP/27DAP1.014150.82
41DAP/39DAP0.982910.886
42DAP/41DAP1.007431
43DAP/42DAP1.284520.378
47DAP/43DAP1.310630.278
52DAP/47DAP0.977940.906
57DAP/52DAP1.051760.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.907760.167
17DAP/reference1.042990.201
27DAP/reference0.94420.369
39DAP/reference0.961630.437
41DAP/reference1.028820.365
42DAP/reference0.832650.002
43DAP/reference1.020110.982
47DAP/reference0.827680.004
52DAP/reference0.784140.032
57DAP/reference0.768590.04

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.665760.075
27DAP/17DAP0.839220.58
39DAP/27DAP1.2120.505
41DAP/39DAP1.177860.641
42DAP/41DAP1.115880.651
43DAP/42DAP1.438420.035
47DAP/43DAP1.028870.963
52DAP/47DAP1.039150.856
57DAP/52DAP0.948630.695
57DAP/7DAP1.894240.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873890.071
17DAP/reference0.831010.011
27DAP/reference0.87890.017
39DAP/reference0.825210.013
41DAP/reference0.792720.013
42DAP/reference0.72810.01
43DAP/reference0.768950.023
47DAP/reference0.84890.101
52DAP/reference0.743430.038
57DAP/reference0.749230.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.059920.404
17DAP/reference1.043930.644
27DAP/reference0.814890.056
39DAP/reference0.956150.404
41DAP/reference0.808420.012
42DAP/reference0.843140.021
43DAP/reference1.279810.073
47DAP/reference0.907510.021
52DAP/reference0.971150.38
57DAP/reference1.139420.26

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.856290.057
17DAP/reference0.915070.286
27DAP/reference0.790850.027
39DAP/reference0.814120.019
41DAP/reference0.826680.02
42DAP/reference0.875360.22
43DAP/reference0.772640.047
47DAP/reference0.918770.286
52DAP/reference0.755960.081
57DAP/reference0.552290.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.915620.915
26DAP/20DAP1.668580.134
34DAP/26DAP0.907670.565
51DAP/34DAP0.927550.824
52DAP/51DAP0.834680.151
53DAP/52DAP1.492250.179
55DAP/53DAP1.107891
57DAP/55DAP1.111930.682
62DAP/57DAP0.917450.871
68DAP/62DAP1.043010.956
68DAP/14DAP0.901421

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.389220.032

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.697860.055
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.393531
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.046320.877
1-1-2/M820.84620.958
12-2/M821.159761
12-4/M820.962151
1-3/M821.10605
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.04813
3-2/M820.561321
4-1-1/M821.17341
4-1/M820.797941
4-3-2/M820.60281
4-3/M821.30909
5-3/M821.006291
6-2/M82N/AN/A
6-3/M820.94157
7-1/M820.858410.803
7-2/M821.068721
9-3-2/M820.739130.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.46536
IL2-6/WTpooled10.35040.395
IL7-5/WTpooled0.686171
IL7-3/WTpooled1.06851
IL12-4/WTpooled1.09930.839
IL1-4/WTpooled1.03791
WT/WTpooled0.792441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.051191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.038270.894
DC3000/delta hrp 6h0.858320.95
DC3000/delta hrp 12h1.035751
DC3000/delta hrp 24h1.069250.37

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.596880.023
DC3000 delta B/DC3000 delta AB0.570750.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.885160.328
Exp 36h0.673490.449
Exp 60h0.680320.258

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004941
Var 0h1.033910.98
Var 12h I row2-row10.709180.39
Var 12h NI row2-row11.037091
Var 36h I row2-row10.86241
Var 36h NI row2-row10.943330.743
Var 60h I row2-row10.927970.832
Var 60h NI row2-row10.974251
Time course 0hI-0hNI1.012891
Time course 12hI-12hNI0.887310.144
Time course 36hI-36hNI0.82490.034
Time course 60hI-60hNI0.306420.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.999060.931
transgenic ySAMdc/azygous control (breaker)1.525490.162
transgenic ySAMdc/azygous control (red)0.828111

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986630.5

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.451130.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.087240.09
Manapal/WT (break)2.142520.14
Manapal/WT (red)0.981990.728