Expression of 1-1-8.4.8.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94963 | 0.586 |
27DAP/17DAP | 0.88073 | 0.72 |
39DAP/27DAP | 1.01415 | 0.82 |
41DAP/39DAP | 0.98291 | 0.886 |
42DAP/41DAP | 1.00743 | 1 |
43DAP/42DAP | 1.28452 | 0.378 |
47DAP/43DAP | 1.31063 | 0.278 |
52DAP/47DAP | 0.97794 | 0.906 |
57DAP/52DAP | 1.05176 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90776 | 0.167 |
17DAP/reference | 1.04299 | 0.201 |
27DAP/reference | 0.9442 | 0.369 |
39DAP/reference | 0.96163 | 0.437 |
41DAP/reference | 1.02882 | 0.365 |
42DAP/reference | 0.83265 | 0.002 |
43DAP/reference | 1.02011 | 0.982 |
47DAP/reference | 0.82768 | 0.004 |
52DAP/reference | 0.78414 | 0.032 |
57DAP/reference | 0.76859 | 0.04 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.66576 | 0.075 |
27DAP/17DAP | 0.83922 | 0.58 |
39DAP/27DAP | 1.212 | 0.505 |
41DAP/39DAP | 1.17786 | 0.641 |
42DAP/41DAP | 1.11588 | 0.651 |
43DAP/42DAP | 1.43842 | 0.035 |
47DAP/43DAP | 1.02887 | 0.963 |
52DAP/47DAP | 1.03915 | 0.856 |
57DAP/52DAP | 0.94863 | 0.695 |
57DAP/7DAP | 1.89424 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87389 | 0.071 |
17DAP/reference | 0.83101 | 0.011 |
27DAP/reference | 0.8789 | 0.017 |
39DAP/reference | 0.82521 | 0.013 |
41DAP/reference | 0.79272 | 0.013 |
42DAP/reference | 0.7281 | 0.01 |
43DAP/reference | 0.76895 | 0.023 |
47DAP/reference | 0.8489 | 0.101 |
52DAP/reference | 0.74343 | 0.038 |
57DAP/reference | 0.74923 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05992 | 0.404 |
17DAP/reference | 1.04393 | 0.644 |
27DAP/reference | 0.81489 | 0.056 |
39DAP/reference | 0.95615 | 0.404 |
41DAP/reference | 0.80842 | 0.012 |
42DAP/reference | 0.84314 | 0.021 |
43DAP/reference | 1.27981 | 0.073 |
47DAP/reference | 0.90751 | 0.021 |
52DAP/reference | 0.97115 | 0.38 |
57DAP/reference | 1.13942 | 0.26 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85629 | 0.057 |
17DAP/reference | 0.91507 | 0.286 |
27DAP/reference | 0.79085 | 0.027 |
39DAP/reference | 0.81412 | 0.019 |
41DAP/reference | 0.82668 | 0.02 |
42DAP/reference | 0.87536 | 0.22 |
43DAP/reference | 0.77264 | 0.047 |
47DAP/reference | 0.91877 | 0.286 |
52DAP/reference | 0.75596 | 0.081 |
57DAP/reference | 0.55229 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91562 | 0.915 |
26DAP/20DAP | 1.66858 | 0.134 |
34DAP/26DAP | 0.90767 | 0.565 |
51DAP/34DAP | 0.92755 | 0.824 |
52DAP/51DAP | 0.83468 | 0.151 |
53DAP/52DAP | 1.49225 | 0.179 |
55DAP/53DAP | 1.10789 | 1 |
57DAP/55DAP | 1.11193 | 0.682 |
62DAP/57DAP | 0.91745 | 0.871 |
68DAP/62DAP | 1.04301 | 0.956 |
68DAP/14DAP | 0.90142 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.38922 | 0.032 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.69786 | 0.055 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.39353 | 1 |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04632 | 0.877 |
1-1-2/M82 | 0.8462 | 0.958 |
12-2/M82 | 1.15976 | 1 |
12-4/M82 | 0.96215 | 1 |
1-3/M82 | 1.10605 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04813 | |
3-2/M82 | 0.56132 | 1 |
4-1-1/M82 | 1.17341 | |
4-1/M82 | 0.79794 | 1 |
4-3-2/M82 | 0.60281 | |
4-3/M82 | 1.30909 | |
5-3/M82 | 1.00629 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.94157 | |
7-1/M82 | 0.85841 | 0.803 |
7-2/M82 | 1.06872 | 1 |
9-3-2/M82 | 0.73913 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.46536 | |
IL2-6/WTpooled | 10.3504 | 0.395 |
IL7-5/WTpooled | 0.68617 | 1 |
IL7-3/WTpooled | 1.0685 | 1 |
IL12-4/WTpooled | 1.0993 | 0.839 |
IL1-4/WTpooled | 1.0379 | 1 |
WT/WTpooled | 0.79244 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05119 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03827 | 0.894 |
DC3000/delta hrp 6h | 0.85832 | 0.95 |
DC3000/delta hrp 12h | 1.03575 | 1 |
DC3000/delta hrp 24h | 1.06925 | 0.37 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.59688 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.57075 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88516 | 0.328 |
Exp 36h | 0.67349 | 0.449 |
Exp 60h | 0.68032 | 0.258 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00494 | 1 |
Var 0h | 1.03391 | 0.98 |
Var 12h I row2-row1 | 0.70918 | 0.39 |
Var 12h NI row2-row1 | 1.03709 | 1 |
Var 36h I row2-row1 | 0.8624 | 1 |
Var 36h NI row2-row1 | 0.94333 | 0.743 |
Var 60h I row2-row1 | 0.92797 | 0.832 |
Var 60h NI row2-row1 | 0.97425 | 1 |
Time course 0hI-0hNI | 1.01289 | 1 |
Time course 12hI-12hNI | 0.88731 | 0.144 |
Time course 36hI-36hNI | 0.8249 | 0.034 |
Time course 60hI-60hNI | 0.30642 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99906 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.52549 | 0.162 |
transgenic ySAMdc/azygous control (red) | 0.82811 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98663 | 0.5 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.45113 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.08724 | 0.09 |
Manapal/WT (break) | 2.14252 | 0.14 |
Manapal/WT (red) | 0.98199 | 0.728 |
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