Expression of 1-1-8.4.9.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.696910.097
27DAP/17DAP0.811350.268
39DAP/27DAP1.321040.606
41DAP/39DAP0.855560.453
42DAP/41DAP0.96551
43DAP/42DAP0.824330.571
47DAP/43DAP0.701880.17
52DAP/47DAP0.988330.9
57DAP/52DAP1.126880.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.630970.007
17DAP/reference1.186130.412
27DAP/reference0.727280.012
39DAP/reference0.997880.957
41DAP/reference0.933260.021
42DAP/reference1.225970.002
43DAP/reference1.175120.047
47DAP/reference0.965920.345
52DAP/reference0.784290.051
57DAP/reference0.941930.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.728530.04
27DAP/17DAP1.031570.954
39DAP/27DAP0.927370.405
41DAP/39DAP1.229450.355
42DAP/41DAP1.001060.835
43DAP/42DAP1.058620.446
47DAP/43DAP1.015130.973
52DAP/47DAP0.714250.131
57DAP/52DAP0.969470.726
57DAP/7DAP0.74981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.597550.024
17DAP/reference1.409960.006
27DAP/reference1.549160.006
39DAP/reference1.220430.015
41DAP/reference1.221070.056
42DAP/reference1.125520.534
43DAP/reference1.167920.074
47DAP/reference1.22460.254
52DAP/reference1.366850.033
57DAP/reference1.096160.125

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.734740.038
17DAP/reference1.685990.007
27DAP/reference1.461770.023
39DAP/reference1.124580.324
41DAP/reference0.969040.451
42DAP/reference1.318550.013
43DAP/reference1.28760.071
47DAP/reference1.565210.008
52DAP/reference0.791180.047
57DAP/reference1.295960.155

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.670840.015
17DAP/reference1.244720.306
27DAP/reference1.18350.052
39DAP/reference1.369540.007
41DAP/reference1.356280.009
42DAP/reference1.399560.021
43DAP/reference1.186750.223
47DAP/reference0.858450.089
52DAP/reference1.079140.664
57DAP/reference0.893040.273

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.114980.966
26DAP/20DAP0.954391
34DAP/26DAP1.028361
51DAP/34DAP0.791760.092
52DAP/51DAP0.86891
53DAP/52DAP1.130360.845
55DAP/53DAP0.930780.663
57DAP/55DAP0.870050.479
62DAP/57DAP1.039871
68DAP/62DAP0.843010.641
68DAP/14DAP1.096310.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.543120.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.257840.666
Mature Green Tomato/Ripe Tomato1.059760.752
Immature Eggplant/Mature Eggplant0.740170.084
Ripe Pepper/Ripe Tomato0.659951
Mature Eggplant/Ripe Tomato1.162160.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.090960.877
1-1-2/M821.155920.891
12-2/M821.034981
12-4/M821.025581
1-3/M820.980621
2-1-1/M820.892780.465
2-1/M820.761540.345
2-6/M821.019930.695
3-2/M820.933861
4-1-1/M820.931161
4-1/M821.117150.287
4-3-2/M821.552360.241
4-3/M821.817521
5-3/M821.071861
6-2/M820.987851
6-3/M820.999561
7-1/M820.848860.803
7-2/M820.961721
9-3-2/M821.160231

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.07880.365
IL2-6/WTpooled0.967121
IL7-5/WTpooled1.286980.75
IL7-3/WTpooled1.10621
IL12-4/WTpooled1.15750.646
IL1-4/WTpooled0.960410.834
WT/WTpooled1.002731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.183740.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.084020.894
DC3000/delta hrp 6h0.898140.95
DC3000/delta hrp 12h0.897721
DC3000/delta hrp 24h1.037270.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.345290.042
DC3000 delta B/DC3000 delta AB1.046990.625

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.849511
Exp 36h1.295181
Exp 60h1.01221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.096661
Var 0h0.797220.933
Var 12h I row2-row11.02950.795
Var 12h NI row2-row11.096331
Var 36h I row2-row11.097371
Var 36h NI row2-row10.867630.61
Var 60h I row2-row10.944780.952
Var 60h NI row2-row10.745370.301
Time course 0hI-0hNI0.89190.339
Time course 12hI-12hNI1.110380.272
Time course 36hI-36hNI1.392270.044
Time course 60hI-60hNI1.454530.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.982520.722
transgenic ySAMdc/azygous control (breaker)1.643330.248
transgenic ySAMdc/azygous control (red)1.500410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.043750.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.856050.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.97741
Manapal/WT (break)1.118320.381
Manapal/WT (red)1.130361