Expression of 1-1-8.4.9.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13103 | 0.725 |
27DAP/17DAP | 1.27011 | 0.761 |
39DAP/27DAP | 1.10097 | 0.733 |
41DAP/39DAP | 1.19731 | 0.929 |
42DAP/41DAP | 1.07708 | 1 |
43DAP/42DAP | 0.85266 | 0.743 |
47DAP/43DAP | 1.06683 | 0.909 |
52DAP/47DAP | 1.24032 | 0.605 |
57DAP/52DAP | 0.92517 | 0.926 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17718 | 0.162 |
17DAP/reference | 1.0699 | 0.33 |
27DAP/reference | 0.99119 | 0.763 |
39DAP/reference | 1.05985 | 0.181 |
41DAP/reference | 1.1377 | 0.027 |
42DAP/reference | 0.99174 | 0.484 |
43DAP/reference | 0.99162 | 0.82 |
47DAP/reference | 0.98548 | 0.503 |
52DAP/reference | 1.04887 | 0.43 |
57DAP/reference | 0.86222 | 0.028 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94977 | 0.509 |
27DAP/17DAP | 1.02415 | 0.912 |
39DAP/27DAP | 1.07445 | 0.548 |
41DAP/39DAP | 1.00174 | 1 |
42DAP/41DAP | 1.04195 | 0.783 |
43DAP/42DAP | 0.97453 | 0.522 |
47DAP/43DAP | 0.98182 | 0.902 |
52DAP/47DAP | 0.95327 | 0.71 |
57DAP/52DAP | 1.02082 | 0.925 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.68652 | 0.029 |
17DAP/reference | 2.51166 | 0.006 |
27DAP/reference | 2.06372 | 0.007 |
39DAP/reference | 2.51966 | 0.005 |
41DAP/reference | 2.33295 | 0.011 |
42DAP/reference | 2.82601 | 0.006 |
43DAP/reference | 3.23094 | 0.006 |
47DAP/reference | 2.05239 | 0.136 |
52DAP/reference | 2.32618 | 0.007 |
57DAP/reference | 2.32126 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26282 | 0.043 |
17DAP/reference | 1.31068 | 0.028 |
27DAP/reference | 1.10948 | 0.244 |
39DAP/reference | 1.20148 | 0.085 |
41DAP/reference | 1.05654 | 0.862 |
42DAP/reference | 0.96478 | 0.212 |
43DAP/reference | 1.09207 | 0.986 |
47DAP/reference | 1.0265 | 0.751 |
52DAP/reference | 1.2162 | 0.016 |
57DAP/reference | 1.27544 | 0.038 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.64463 | 0.027 |
17DAP/reference | 1.43326 | 0.166 |
27DAP/reference | 2.83627 | 0.02 |
39DAP/reference | 2.41461 | 0.007 |
41DAP/reference | 2.11266 | 0.011 |
42DAP/reference | 2.15913 | 0.038 |
43DAP/reference | 1.70332 | 0.073 |
47DAP/reference | 1.00689 | 1 |
52DAP/reference | 2.21268 | 0.072 |
57DAP/reference | 1.22836 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99393 | 1 |
26DAP/20DAP | 1.03388 | 0.962 |
34DAP/26DAP | 1.00652 | 1 |
51DAP/34DAP | 0.97688 | 0.799 |
52DAP/51DAP | 1.02121 | 0.77 |
53DAP/52DAP | 1.02283 | 0.901 |
55DAP/53DAP | 1.03593 | 0.771 |
57DAP/55DAP | 1.05337 | 0.935 |
62DAP/57DAP | 1.1357 | 0.723 |
68DAP/62DAP | 1.09722 | 0.747 |
68DAP/14DAP | 1.05114 | 0.87 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83037 | 0.083 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.18332 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.93796 | 0.522 |
Immature Eggplant/Mature Eggplant | 1.02051 | 0.633 |
Ripe Pepper/Ripe Tomato | 0.67316 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.77499 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11716 | 0.742 |
1-1-2/M82 | 0.98874 | 1 |
12-2/M82 | 1.01315 | 1 |
12-4/M82 | 0.84239 | 1 |
1-3/M82 | 0.89384 | 0.378 |
2-1-1/M82 | 0.94123 | |
2-1/M82 | 1.4449 | |
2-6/M82 | 1.08138 | 0.452 |
3-2/M82 | 0.96342 | 1 |
4-1-1/M82 | 1.03973 | 1 |
4-1/M82 | 0.94095 | 1 |
4-3-2/M82 | 0.92679 | 1 |
4-3/M82 | 1.16356 | 1 |
5-3/M82 | 1.0544 | 1 |
6-2/M82 | 1.00021 | 1 |
6-3/M82 | 1.02425 | 1 |
7-1/M82 | 1.06278 | 0.598 |
7-2/M82 | 1.05014 | 1 |
9-3-2/M82 | 0.95781 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.69171 | 0.243 |
IL2-6/WTpooled | 1.76178 | 0.531 |
IL7-5/WTpooled | 1.01141 | |
IL7-3/WTpooled | 0.91481 | 0.294 |
IL12-4/WTpooled | 1.44131 | 0.538 |
IL1-4/WTpooled | 0.90133 | 0.444 |
WT/WTpooled | 1.14328 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94401 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04115 | 0.921 |
DC3000/delta hrp 6h | 1.10855 | 1 |
DC3000/delta hrp 12h | 1.1164 | 1 |
DC3000/delta hrp 24h | 1.24942 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11893 | 0.476 |
DC3000 delta B/DC3000 delta AB | 1.17927 | 0.201 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06783 | 1 |
Exp 36h | 1.04341 | 1 |
Exp 60h | 1.09781 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97875 | 1 |
Var 0h | 1.61119 | 0.98 |
Var 12h I row2-row1 | 1.15149 | 0.263 |
Var 12h NI row2-row1 | 1.01314 | 1 |
Var 36h I row2-row1 | 0.94467 | 1 |
Var 36h NI row2-row1 | 0.82091 | 0.421 |
Var 60h I row2-row1 | 1.09764 | 1 |
Var 60h NI row2-row1 | 1.07803 | 1 |
Time course 0hI-0hNI | 1.11901 | 0.719 |
Time course 12hI-12hNI | 1.00099 | 1 |
Time course 36hI-36hNI | 1.00734 | 1 |
Time course 60hI-60hNI | 1.5186 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07266 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 0.83108 | 0.124 |
transgenic ySAMdc/azygous control (red) | 1.05641 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97166 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.6995 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94494 | 0.172 |
Manapal/WT (break) | 0.90396 | 1 |
Manapal/WT (red) | 0.83528 | 0.187 |
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