Expression of 1-1-8.4.9.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.131030.725
27DAP/17DAP1.270110.761
39DAP/27DAP1.100970.733
41DAP/39DAP1.197310.929
42DAP/41DAP1.077081
43DAP/42DAP0.852660.743
47DAP/43DAP1.066830.909
52DAP/47DAP1.240320.605
57DAP/52DAP0.925170.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.177180.162
17DAP/reference1.06990.33
27DAP/reference0.991190.763
39DAP/reference1.059850.181
41DAP/reference1.13770.027
42DAP/reference0.991740.484
43DAP/reference0.991620.82
47DAP/reference0.985480.503
52DAP/reference1.048870.43
57DAP/reference0.862220.028

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.949770.509
27DAP/17DAP1.024150.912
39DAP/27DAP1.074450.548
41DAP/39DAP1.001741
42DAP/41DAP1.041950.783
43DAP/42DAP0.974530.522
47DAP/43DAP0.981820.902
52DAP/47DAP0.953270.71
57DAP/52DAP1.020820.925
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.686520.029
17DAP/reference2.511660.006
27DAP/reference2.063720.007
39DAP/reference2.519660.005
41DAP/reference2.332950.011
42DAP/reference2.826010.006
43DAP/reference3.230940.006
47DAP/reference2.052390.136
52DAP/reference2.326180.007
57DAP/reference2.321260.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.262820.043
17DAP/reference1.310680.028
27DAP/reference1.109480.244
39DAP/reference1.201480.085
41DAP/reference1.056540.862
42DAP/reference0.964780.212
43DAP/reference1.092070.986
47DAP/reference1.02650.751
52DAP/reference1.21620.016
57DAP/reference1.275440.038

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.644630.027
17DAP/reference1.433260.166
27DAP/reference2.836270.02
39DAP/reference2.414610.007
41DAP/reference2.112660.011
42DAP/reference2.159130.038
43DAP/reference1.703320.073
47DAP/reference1.006891
52DAP/reference2.212680.072
57DAP/reference1.228361

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.993931
26DAP/20DAP1.033880.962
34DAP/26DAP1.006521
51DAP/34DAP0.976880.799
52DAP/51DAP1.021210.77
53DAP/52DAP1.022830.901
55DAP/53DAP1.035930.771
57DAP/55DAP1.053370.935
62DAP/57DAP1.13570.723
68DAP/62DAP1.097220.747
68DAP/14DAP1.051140.87

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.830370.083

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.183320.068
Mature Green Tomato/Ripe Tomato0.937960.522
Immature Eggplant/Mature Eggplant1.020510.633
Ripe Pepper/Ripe Tomato0.673160.224
Mature Eggplant/Ripe Tomato0.774991

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.117160.742
1-1-2/M820.988741
12-2/M821.013151
12-4/M820.842391
1-3/M820.893840.378
2-1-1/M820.94123
2-1/M821.4449
2-6/M821.081380.452
3-2/M820.963421
4-1-1/M821.039731
4-1/M820.940951
4-3-2/M820.926791
4-3/M821.163561
5-3/M821.05441
6-2/M821.000211
6-3/M821.024251
7-1/M821.062780.598
7-2/M821.050141
9-3-2/M820.957811

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.691710.243
IL2-6/WTpooled1.761780.531
IL7-5/WTpooled1.01141
IL7-3/WTpooled0.914810.294
IL12-4/WTpooled1.441310.538
IL1-4/WTpooled0.901330.444
WT/WTpooled1.143281

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.944011

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041150.921
DC3000/delta hrp 6h1.108551
DC3000/delta hrp 12h1.11641
DC3000/delta hrp 24h1.249420.264

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.118930.476
DC3000 delta B/DC3000 delta AB1.179270.201

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.067831
Exp 36h1.043411
Exp 60h1.097810.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.978751
Var 0h1.611190.98
Var 12h I row2-row11.151490.263
Var 12h NI row2-row11.013141
Var 36h I row2-row10.944671
Var 36h NI row2-row10.820910.421
Var 60h I row2-row11.097641
Var 60h NI row2-row11.078031
Time course 0hI-0hNI1.119010.719
Time course 12hI-12hNI1.000991
Time course 36hI-36hNI1.007341
Time course 60hI-60hNI1.51860.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.072660.326
transgenic ySAMdc/azygous control (breaker)0.831080.124
transgenic ySAMdc/azygous control (red)1.056410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.971660.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.69950.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.944940.172
Manapal/WT (break)0.903961
Manapal/WT (red)0.835280.187