Solyc04g079460 expression
Experiment: Transcriptome profiling of pennellii ILs
| sample ID | genotype | description | RPM |
|---|
| S0001 | M82 | fruit, red ripe, M82 | 3.06 |
| S0002 | 1-1 | fruit, red ripe, S. pennellii IL1-1 | 2.83 |
| S0003 | 1-1-2 | fruit, red ripe, S. pennellii IL1-1-2 | 0.89 |
| S0004 | 1-1-3 | fruit, red ripe, S. pennellii IL1-1-3 | 1.93 |
| S0005 | 1-2 | fruit, red ripe, S. pennellii IL1-2 | 2.92 |
| S0006 | 1-3 | fruit, red ripe, S. pennellii IL1-3 | 2.59 |
| S0007 | 1-4 | fruit, red ripe, S. pennellii IL1-4 | 2.43 |
| S0008 | 1-4-18 | fruit, red ripe, S. pennellii IL1-4-18 | 1.68 |
| S0009 | 2-1 | fruit, red ripe, S. pennellii IL2-1 | 1.26 |
| S0010 | 2-1-1 | fruit, red ripe, S. pennellii IL2-1-1 | 3.49 |
| S0011 | 2-2 | fruit, red ripe, S. pennellii IL2-2 | 3.71 |
| S0012 | 2-3 | fruit, red ripe, S. pennellii IL2-3 | 0.96 |
| S0013 | 2-4 | fruit, red ripe, S. pennellii IL2-4 | 1.5 |
| S0014 | 2-5 | fruit, red ripe, S. pennellii IL2-5 | 0.34 |
| S0015 | 2-6 | fruit, red ripe, S. pennellii IL2-6 | 1.79 |
| S0016 | 2-6-5 | fruit, red ripe, S. pennellii IL2-6-5 | 0.81 |
| S0017 | 3-1 | fruit, red ripe, S. pennellii IL3-1 | 1.18 |
| S0018 | 3-2 | fruit, red ripe, S. pennellii IL3-2 | 2.97 |
| S0020 | 3-4 | fruit, red ripe, S. pennellii IL3-4 | 1.4 |
| S0021 | 3-5 | fruit, red ripe, S. pennellii IL3-5 | 1.96 |
| S0022 | 4-1 | fruit, red ripe, S. pennellii IL4-1 | 3.24 |
| S0023 | 4-1-1 | fruit, red ripe, S. pennellii IL4-1-1 | 0.95 |
| S0024 | 4-2 | fruit, red ripe, S. pennellii IL4-2 | 7.53 |
| S0025 | 4-3 | fruit, red ripe, S. pennellii IL4-3 | 0.25 |
| S0026 | 4-3-2 | fruit, red ripe, S. pennellii IL4-3-2 | 3.61 |
| S0027 | 4-4 | fruit, red ripe, S. pennellii IL4-4 | 0 |
| S0028 | 5-1 | fruit, red ripe, S. pennellii IL5-1 | 1.28 |
| S0029 | 5-2 | fruit, red ripe, S. pennellii IL5-2 | 0.67 |
| S0030 | 5-3 | fruit, red ripe, S. pennellii IL5-3 | 0.65 |
| S0031 | 5-4 | fruit, red ripe, S. pennellii IL5-4 | 3.93 |
| S0032 | 5-5 | fruit, red ripe, S. pennellii IL5-5 | 5.39 |
| S0034 | 6-2 | fruit, red ripe, S. pennellii IL6-2 | 0.29 |
| S0035 | 6-2-2 | fruit, red ripe, S. pennellii IL6-2-2 | 0.19 |
| S0036 | 6-3 | fruit, red ripe, S. pennellii IL6-3 | 1.44 |
| S0037 | 6-4 | fruit, red ripe, S. pennellii IL6-4 | 0.79 |
| S0038 | 7-1 | fruit, red ripe, S. pennellii IL7-1 | 1.56 |
| S0039 | 7-2 | fruit, red ripe, S. pennellii IL7-2 | 1.25 |
| S0040 | 7-3 | fruit, red ripe, S. pennellii IL7-3 | 1.57 |
| S0041 | 7-4 | fruit, red ripe, S. pennellii IL7-4 | 2.08 |
| S0042 | 7-4-1 | fruit, red ripe, S. pennellii IL7-4-1 | 1.54 |
| S0043 | 7-5 | fruit, red ripe, S. pennellii IL7-5 | 1.96 |
| S0044 | 7-5-5 | fruit, red ripe, S. pennellii IL7-5-5 | 2.22 |
| S0045 | 8-1 | fruit, red ripe, S. pennellii IL8-1 | 0.45 |
| S0046 | 8-1-1 | fruit, red ripe, S. pennellii IL8-1-1 | 2.86 |
| S0047 | 8-1-5 | fruit, red ripe, S. pennellii IL8-1-5 | 1.68 |
| S0048 | 8-2 | fruit, red ripe, S. pennellii IL8-2 | 2.7 |
| S0049 | 8-2-1 | fruit, red ripe, S. pennellii IL8-2-1 | 4.24 |
| S0050 | 8-3 | fruit, red ripe, S. pennellii IL8-3 | 2.22 |
| S0051 | 8-3-1 | fruit, red ripe, S. pennellii IL8-3-1 | 2.9 |
| S0052 | 9-1 | fruit, red ripe, S. pennellii IL9-1 | 3.65 |
| S0053 | 9-1-2 | fruit, red ripe, S. pennellii IL9-1-2 | 4.02 |
| S0054 | 9-1-3 | fruit, red ripe, S. pennellii IL9-1-3 | 0 |
| S0055 | 9-2 | fruit, red ripe, S. pennellii IL9-2 | 5.99 |
| S0056 | 9-2-5 | fruit, red ripe, S. pennellii IL9-2-5 | 2.63 |
| S0057 | 9-2-6 | fruit, red ripe, S. pennellii IL9-2-6 | 1.66 |
| S0058 | 9-3 | fruit, red ripe, S. pennellii IL9-3 | 1.19 |
| S0059 | 9-3-1 | fruit, red ripe, S. pennellii IL9-3-1 | 2.3 |
| S0060 | 9-3-2 | fruit, red ripe, S. pennellii IL9-3-2 | 1.8 |
| S0061 | 10-1 | fruit, red ripe, S. pennellii IL10-1 | 2.69 |
| S0062 | 10-1-1 | fruit, red ripe, S. pennellii IL10-1-1 | 1.08 |
| S0063 | 10-2 | fruit, red ripe, S. pennellii IL10-2 | 5.17 |
| S0064 | 10-2-2 | fruit, red ripe, S. pennellii IL10-2-2 | 5.5 |
| S0065 | 10-3 | fruit, red ripe, S. pennellii IL10-3 | 3.09 |
| S0066 | 11-1 | fruit, red ripe, S. pennellii IL11-1 | 2.05 |
| S0067 | 11-2 | fruit, red ripe, S. pennellii IL11-2 | 4.47 |
| S0068 | 11-3 | fruit, red ripe, S. pennellii IL11-3 | 1.49 |
| S0069 | 11-4 | fruit, red ripe, S. pennellii IL11-4 | 1.12 |
| S0070 | 11-4-1 | fruit, red ripe, S. pennellii IL11-4-1 | 1.15 |
| S0071 | 12-1 | fruit, red ripe, S. pennellii IL12-1 | 2 |
| S0072 | 12-1-1 | fruit, red ripe, S. pennellii IL12-1-1 | 0.81 |
| S0073 | 12-2 | fruit, red ripe, S. pennellii IL12-2 | 0.21 |
| S0074 | 12-3 | fruit, red ripe, S. pennellii IL12-3 | 2.4 |
| S0075 | 12-3-1 | fruit, red ripe, S. pennellii IL12-3-1 | 0.78 |
| S0076 | 12-4 | fruit, red ripe, S. pennellii IL12-4 | 0.58 |
| S0077 | 12-4-1 | fruit, red ripe, S. pennellii IL12-4-1 | 2.83 |
Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium
| sample ID | genotype | description | RPM |
|---|
| S0584 | Heinz | Heinz unopened flower buds | 0.1 |
| S0585 | Heinz | Heinz fully opened flowers | 0.11 |
| S0586 | Heinz | Heinz 1 cm fruits | 0 |
| S0587 | Heinz | Heinz 2 cm fruits | 0 |
| S0588 | Heinz | Heinz 3 cm fruits | 0 |
| S0589 | Heinz | Heinz mature green fruits | 0.51 |
| S0590 | Heinz | Heinz breaker fruits | 0 |
| S0591 | Heinz | Heinz breaker+10 fruits | 0.68 |
| S0592 | Heinz | Heinz roots | 1.02 |
| S0593 | Heinz | Heinz leaves | 0 |
| S0594 | | pimpinellifolium immature green fruits | 0 |
| S0595 | | pimpinellifolium breaker fruits | 0.27 |
| S0596 | | pimpinellifolium breaker+5 fruits | 0.13 |
| S0597 | | pimpinellifolium leaves | 0 |
Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background
| sample ID | genotype | description | RPM |
|---|
| S0929 | LA1589 | LA1589 young flower buds at 4 days post-initiation of floral meristem | 0.08 |
| S0930 | LA1589 | LA1589 young flower buds at 6 days post-initiation of floral meristem | 0 |
| S0931 | LA1589 | LA1589 young flower buds at 8 days post-initiation of floral meristem | 0 |
| S0932 | LA1589 | LA1589 young flower buds at 10 days post-initiation of floral meristem | 0.05 |
| S0933 | LA1589 | LA1589 young flower buds at 13 days post-initiation of floral meristem | 2.6 |
| S0934 | LA1589 | LA1589 young flower buds at 16 days post-initiation of floral meristem | 0.25 |
| S0935 | sun NIL in the LA1589 background | sun young flower buds at 4 days post-initiation of floral meristem | 0 |
| S0936 | sun NIL in the LA1589 background | sun young flower buds at 6 days post-initiation of floral meristem | 0.11 |
| S0937 | sun NIL in the LA1589 background | sun young flower buds at 8 days post-initiation of floral meristem | 0 |
| S0938 | sun NIL in the LA1589 background | sun young flower buds at 10 days post-initiation of floral meristem | 0.15 |
| S0939 | sun NIL in the LA1589 background | sun young flower buds at 13 days post-initiation of floral meristem | 0.27 |
| S0940 | sun NIL in the LA1589 background | sun young flower buds at 16 days post-initiation of floral meristem | 0.19 |
| S0941 | ovate NIL in the LA1589 background | ovate young flower buds at 4 days post-initiation of floral meristem | 0.06 |
| S0942 | ovate NIL in the LA1589 background | ovate young flower buds at 6 days post-initiation of floral meristem | 0.1 |
| S0943 | ovate NIL in the LA1589 background | ovate young flower buds at 8 days post-initiation of floral meristem | 0 |
| S0944 | ovate NIL in the LA1589 background | ovate young flower buds at 10 days post-initiation of floral meristem | 0.19 |
| S0945 | ovate NIL in the LA1589 background | ovate young flower buds at 13 days post-initiation of floral meristem | 2.38 |
| S0946 | ovate NIL in the LA1589 background | ovate young flower buds at 16 days post-initiation of floral meristem | 1.96 |
| S0947 | fs8.1 NIL in the LA1589 background | fs8.1 young flower buds at 4 days post-initiation of floral meristem | 0 |
| S0948 | fs8.1 NIL in the LA1589 background | fs8.1 young flower buds at 6 days post-initiation of floral meristem | 0.21 |
| S0949 | fs8.1 NIL in the LA1589 background | fs8.1 young flower buds at 8 days post-initiation of floral meristem | 0 |
| S0950 | fs8.1 NIL in the LA1589 background | fs8.1 young flower buds at 10 days post-initiation of floral meristem | 0.48 |
| S0951 | fs8.1 NIL in the LA1589 background | fs8.1 young flower buds at 13 days post-initiation of floral meristem | 0.87 |
| S0952 | fs8.1 NIL in the LA1589 background | fs8.1 young flower buds at 16 days post-initiation of floral meristem | 0.27 |
Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589
| sample ID | genotype | description | RPM |
|---|
| S0608 | LA1589 | anthesis flowers (0DPA) | 0 |
| S0609 | LA1589 | 10 days post anthesis fruit (10 DPA1) | 0.03 |
| S0610 | LA1589 | 10 days post anthesis fruit 2 (10 DPA2) | 0.05 |
| S0611 | LA1589 | 20 days post anthesis fruit (20DPA) | 0 |
| S0612 | LA1589 | rippening fruit (33DPA) | 0 |
| S0613 | LA1589 | cotyledons (COTYL) | 1.13 |
| S0614 | LA1589 | hypocotyl (HYPO) | 0.35 |
| S0615 | LA1589 | vegitative meristems (MERI) | 0.68 |
| S0616 | LA1589 | mature leaves (ML) | 0.19 |
| S0617 | LA1589 | whole root (ROOT) | 1.52 |
| S0618 | LA1589 | young flower buds (YFB) | 0.05 |
| S0619 | LA1589 | young leaves (YL) | 0.08 |
Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs
| sample ID | genotype | description | RPM |
|---|
| S0620 | Rio Grande prf3 (deletion in Prf) | mock PAMPs 30 min | 3.32 |
| S0621 | Rio Grande prf3 (deletion in Prf) | cold shock protein 22 (csp22) 30 min | 6.76 |
| S0622 | Rio Grande prf3 (deletion in Prf) | flagellin 22 (flg22) 30 min | 10.53 |
| S0623 | Rio Grande prf3 (deletion in Prf) | flagellin II-28 (flgII-28) 30 min | 5.16 |
| S0624 | Rio Grande prf3 (deletion in Prf) | Lipopolysaccharides (LPS) 30 min | 3.63 |
| S0625 | Rio Grande prf3 (deletion in Prf) | Peptidoglycan (PGN) 30 min | 5.82 |
| S0626 | Rio Grande prf3 (deletion in Prf) | mock PAMPs 6h | 0.19 |
| S0627 | Rio Grande prf3 (deletion in Prf) | cold shock protein 22 (csp22) 6 h | 0.12 |
| S0628 | Rio Grande prf3 (deletion in Prf) | flagellin 22 (flg22) 6h | 0.32 |
| S0629 | Rio Grande prf3 (deletion in Prf) | flagellin II-28 (flgII-28) 6h | 0.45 |
| S0630 | Rio Grande prf3 (deletion in Prf) | Lipopolysaccharides (LPS) 6 h | 0.29 |
| S0631 | Rio Grande prf3 (deletion in Prf) | Peptidoglycan (PGN) 6h | 0.31 |
| S0632 | Rio Grande prf3 (deletion in Prf) | mock bacteria 30 min | 3.42 |
| S0633 | Rio Grande prf3 (deletion in Prf) | DC3000 30 min | 4.91 |
| S0634 | Rio Grande prf3 (deletion in Prf) | DC3000ΔhrcQ-U 30 min | 3.51 |
| S0635 | Rio Grande prf3 (deletion in Prf) | DC3000ΔhrcQ-UΔfliC 30 min | 5.19 |
| S0636 | Rio Grande prf3 (deletion in Prf) | DC3000Δ28 30 min | 4.33 |
| S0637 | Rio Grande prf3 (deletion in Prf) | DC3000ΔAvrPtoΔAvrPtoB 30 min | 1.85 |
| S0638 | Rio Grande prf3 (deletion in Prf) | Pseudomonas fluorescens 30 min | 2.05 |
| S0639 | Rio Grande prf3 (deletion in Prf) | Pseudomonas putida 30 min | 1.76 |
| S0640 | Rio Grande prf3 (deletion in Prf) | Agrobacterium tumefaciens 30 min | 2.71 |
| S0641 | Rio Grande prf3 (deletion in Prf) | mock bacteria 6 h | 0.52 |
| S0642 | Rio Grande prf3 (deletion in Prf) | DC3000 6 h | 0.43 |
| S0643 | Rio Grande prf3 (deletion in Prf) | DC3000ΔhrcQ-U 6 h | 0.22 |
| S0644 | Rio Grande prf3 (deletion in Prf) | DC3000ΔhrcQ-UΔfliC 6 h | 0.15 |
| S0645 | Rio Grande prf3 (deletion in Prf) | DC3000Δ28 6 h | 0.47 |
| S0646 | Rio Grande prf3 (deletion in Prf) | DC3000ΔAvrPtoΔAvrPtoB 6 h | 0.21 |
| S0647 | Rio Grande prf3 (deletion in Prf) | Pseudomonas fluorescens 6 h | 0.11 |
| S0648 | Rio Grande prf3 (deletion in Prf) | Pseudomonas putida 6 h | 0.21 |
| S0649 | Rio Grande prf3 (deletion in Prf) | Agrobacterium tumefaciens 6 h | 0.12 |
Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs
| sample ID | genotype | description | RPM |
|---|
| S0671 | Yellow Stuffer (cultivated allele of fw3.2) | fw3.2(ys) 5 Days Post Anthesis Pericarp | 0.09 |
| S0672 | Yellow Stuffer (wild allele of fw3.2) | fw3.2(wt) 5 Days Post Anthesis Pericarp | 0.18 |
| S0673 | Yellow Stuffer (cultivated allele of fw3.2) | fw3.2(ys) 7 Days Post Anthesis Pericarp | 0.04 |
| S0674 | Yellow Stuffer (wild allele of fw3.2) | fw3.2(wt) 7 Days Post Anthesis Pericarp | 0.06 |
| S0675 | Yellow Stuffer (cultivated allele of fw3.2) | fw3.2(ys) 10 Days Post Anthesis Pericarp | 0.1 |
| S0676 | Yellow Stuffer (wild allele of fw3.2) | fw3.2(wt) 10 Days Post Anthesis Pericarp | 0.12 |
| S0677 | Yellow Stuffer (cultivated allele of fw3.2) | fw3.2(ys) 5 Days Post Anthesis Seed | 0.1 |
| S0678 | Yellow Stuffer (wild allele of fw3.2) | fw3.2(wt) 5 Days Post Anthesis Seed | 0.21 |
| S0679 | Yellow Stuffer (cultivated allele of fw3.2) | fw3.2(ys) 7 Days Post Anthesis Seed | 0.02 |
| S0680 | Yellow Stuffer (wild allele of fw3.2) | fw3.2(wt) 7 Days Post Anthesis Seed | 0.05 |
| S0681 | Yellow Stuffer (cultivated allele of fw3.2) | fw3.2(ys) 10 Days Post Anthesis Seed | 0.02 |
| S0682 | Yellow Stuffer (wild allele of fw3.2) | fw3.2(wt) 10 Days Post Anthesis Seed | 0 |
| S0683 | Yellow Stuffer (cultivated allele of fw3.2) | fw3.2(ys) young flower bud | 0.1 |
| S0684 | Yellow Stuffer (wild allele of fw3.2) | fw3.2(wt) young flower bud | 0.02 |
Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq
| sample ID | genotype | description | RPM |
|---|
| S0685 | LA1589 | LA1589, Ovule 0 dpa (SA1_D0_OV) | 0 |
| S0686 | sun | sun, Ovule 0 dpa (SA2_D0_OV) | 0.11 |
| S0687 | LA1589 | LA1589, Placenta 0 dpa (SA1_D0_PL) | 0.06 |
| S0688 | sun | sun, Placenta 0 dpa (SA2_D0_PL) | 0.6 |
| S0689 | LA1589 | LA1589, Septum 0 dpa (SA1_D0_SE) | 0.3 |
| S0690 | sun | sun, Septum 0 dpa (SA2_D0_SE) | 0.06 |
| S0691 | LA1589 | LA1589, Pericarp 0 dpa (SA1_D0_PE) | 0.04 |
| S0692 | sun | sun, Pericarp 0 dpa (SA2_D0_PE) | 0.08 |
| S0693 | LA1589 | LA1589, Embryo 4 dpa Fruit (SA1_D4_EM) | 0.02 |
| S0694 | sun | sun, Embryo 4 dpa Fruit (SA2_D4_EM) | 0.09 |
| S0695 | LA1589 | LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO) | 0.11 |
| S0696 | sun | sun, Endosperm 4 dpa Fruit (SA2_D4_ENDO) | 0.02 |
| S0697 | LA1589 | LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC) | 0 |
| S0698 | sun | sun, Seed Coat 4 dpa Fruit (SA2_D4_SC) | 0.07 |
| S0699 | LA1589 | LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU) | 0.12 |
| S0700 | sun | sun, Funiculus 4 dpa Fruit (SA2_D4_FU) | 0.07 |
| S0701 | LA1589 | LA1589, Placenta 4 dpa Fruit (SA1_D4_PL) | 0.02 |
| S0702 | sun | sun, Placenta 4 dpa Fruit (SA2_D4_PL) | 0.08 |
| S0703 | LA1589 | LA1589, Septum 4 dpa Fruit (SA1_D4_SE) | 0.21 |
| S0704 | sun | sun, Septum 4 dpa Fruit (SA2_D4_SE) | 0.23 |
| S0705 | LA1589 | LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE) | 0.58 |
| S0706 | sun | sun, Pericarp 4 dpa Fruit (SA2_D4_PE) | 0.78 |
Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000
| sample ID | genotype | description | RPM |
|---|
| S0740 | Rio Grande-PtoR | DC3000 4 h | 0.5 |
| S0741 | Rio Grande-prf3 | DC3000 4 h | 0 |
| S0742 | Rio Grande-prf19 | DC3000 4 h | 0.38 |
| S0743 | Rio Grande-PtoR | DC3000 6 h | 0.18 |
| S0744 | Rio Grande-prf3 | DC3000 6 h | 0.18 |
| S0745 | Rio Grande-prf19 | DC3000 6 h | 0.07 |
Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains
| sample ID | genotype | description | RPM |
|---|
| S0746 | Rio Grande-PtoR | DC3000ΔhopQ1-1 ΔfliC 6 h | 0.27 |
| S0747 | Rio Grande-PtoR | DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h | 0.12 |
| S0748 | Rio Grande-PtoR | DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h | 0.09 |
Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background
| sample ID | genotype | description | RPM |
|---|
| S0749 | fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background | 09S204-ee, ovary(anthesis) | 0 |
| S0750 | WT, backcrossed line 09S204, BC4F2, Rio Grande background | 09S204-pp, ovary(anthesis) | 0 |
| S0751 | fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background | 09S236-ee, ovary(anthesis) | 0 |
| S0752 | WT, backcrossed line 09S236, BC3F2, Rio Grande background | 09S236-pp, ovary(anthesis) | 0 |
| S0753 | fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background | 09S237-ee, ovary(anthesis) | 0 |
| S0754 | WT, backcrossed line 09S237, BC1F4, Rio Grande background | 09S237-pp, ovary(anthesis) | 0 |
Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation
| sample ID | genotype | description | RPM |
|---|
| S0755 | Rio Grande-prf3 | D28E (pCPP45::avrPto) 6 h | 0 |
| S0756 | Rio Grande-prf3 | D28E (pCPP45::avrPto I96A) 6 h | 0.14 |
| S0757 | Rio Grande-prf3 | D28E (pCPP45::avrPto 2xA) 6 h | 0.1 |
| S0758 | Rio Grande-prf3 | D28E (pCPP45::avrPto I96A + 2xA) 6 h | 0.11 |
| S0759 | Rio Grande-prf3 | Mock 6 h | 0.1 |
Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB
| sample ID | genotype | description | RPM |
|---|
| S0658 | Rio Grande prf3 (deletion in Prf) | Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h | 0.6 |
| S0659 | Rio Grande prf3 (deletion in Prf) | hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h | 1.32 |
| S0660 | Rio Grande prf3 (deletion in Prf) | hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h | 0.34 |
| S0661 | Rio Grande prf3 (deletion in Prf) | Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h | 0.09 |
| S0662 | Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10 | hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h | 0.19 |
| S0663 | Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27 | hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h | 0.12 |
Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background
| sample ID | genotype | description | RPM |
|---|
| S1087 | LA1589 | 2dpi floral buds | 0 |
| S1088 | lc | 2dpi floral buds | 0 |
| S1089 | fas | 2dpi floral buds | 0 |
| S1090 | lc/fas | 2dpi floral buds | 0 |
| S1091 | LA1589 | 4dpi floral buds | 0 |
| S1092 | lc | 4dpi floral buds | 0 |
| S1093 | fas | 4dpi floral buds | 0 |
| S1094 | lc/fas | 4dpi floral buds | 0 |
| S1095 | LA1589 | 6dpi floral buds | 0 |
| S1096 | lc | 6dpi floral buds | 0 |
| S1097 | fas | 6dpi floral buds | 0 |
| S1098 | lc/fas | 6dpi floral buds | 0 |
| S1099 | LA1589 | floral and inflorescence meristem | 0 |
| S1100 | lc | floral and inflorescence meristem | 0 |
| S1101 | fas | floral and inflorescence meristem | 0 |
| S1102 | lc/fas | floral and inflorescence meristem | 0 |
| S1103 | LA1589 | sympodial shoot apical meristem | 0.36 |
| S1104 | lc | sympodial shoot apical meristem | 0 |
| S1105 | fas | sympodial shoot apical meristem | 0 |
| S1106 | lc/fas | sympodial shoot apical meristem | 0 |
Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background
| sample ID | genotype | description | RPM |
|---|
| S0764 | LA1589 | LA1589, flowers | 0.88 |
| S0765 | ovate | ovate, flowers | 0.77 |
| S0766 | sov1 | sov1, flowers | 0.34 |
| S0767 | ovate/sov1 | ovate/sov1, flowers | 0.14 |
Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background
| sample ID | genotype | description | RPM |
|---|
| S0768 | Rio Grande (fw11.3-D) | fw11.3-D Pericarp, 10 Days Post Anthesis | 0.03 |
| S0769 | Rio Grande (fw11.3-D) | fw11.3-D Septum and Placenta, 10 Days Post Anthesis | 0.07 |
| S0770 | Rio Grande (fw11.3-D) | fw11.3-D Columella, 10 Days Post Anthesis | 0.06 |
| S0771 | Rio Grande (fw11.3-D) | fw11.3-D Pericarp, 15 Days Post Anthesis | 0.09 |
| S0772 | Rio Grande (fw11.3-D) | fw11.3-D Septum and Placenta, 15 Days Post Anthesis | 0.23 |
| S0773 | Rio Grande (fw11.3-D) | fw11.3-D Columella, 15 Days Post Anthesis | 0.09 |
| S0774 | Rio Grande (fw11.3-D) | fw11.3-D Pericarp, 25 Days Post Anthesis | 1.21 |
| S0775 | Rio Grande (fw11.3-D) | fw11.3-D Septum and Placenta, 25 Days Post Anthesis | 0.39 |
| S0776 | Rio Grande (fw11.3-D) | fw11.3-D Columella, 25 Days Post Anthesis | 0.28 |
| S0777 | Rio Grande (fw11.3-D) | fw11.3-D Pericarp, 33 Days Post Anthesis | 0 |
| S0778 | Rio Grande (fw11.3-D) | fw11.3-D Septum and Placenta, 33 Days Post Anthesis | 0 |
| S0779 | Rio Grande (fw11.3-D) | fw11.3-D Columella, 33 Days Post Anthesis | 0 |
| S0780 | Rio Grande (fw11.3-D) | fw11.3-D Pericarp, 4 Days Post Anthesis | 0 |
| S0781 | Rio Grande (fw11.3-D) | fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis | 0 |
| S0782 | Rio Grande (fw11.3-D) | fw11.3-D Pericarp, 7 Days Post Anthesis | 0 |
| S0783 | Rio Grande (fw11.3-D) | fw11.3-D Septum and Placenta, 7 Days Post Anthesis | 0 |
| S0784 | Rio Grande (fw11.3-D) | fw11.3-D Columella, 7 Days Post Anthesis | 0 |
| S0785 | Rio Grande (fw11.3-D) | fw11.3-D Pericarp, Turning | 0 |
| S0786 | Rio Grande (fw11.3-D) | fw11.3-D Septum and Placenta, Turning | 0 |
| S0787 | Rio Grande (fw11.3-D) | fw11.3-D Columella, Turning | 0 |
| S0788 | Rio Grande (fw11.3-WT) | fw11.3-WT Pericarp, 10 Days Post Anthesis | 0 |
| S0789 | Rio Grande (fw11.3-WT) | fw11.3-WT Septum and Placenta, 10 Days Post Anthesis | 0.07 |
| S0790 | Rio Grande (fw11.3-WT) | fw11.3-WT Columella, 10 Days Post Anthesis | 0 |
| S0791 | Rio Grande (fw11.3-WT) | fw11.3-WT Pericarp, 15 Days Post Anthesis | 0.08 |
| S0792 | Rio Grande (fw11.3-WT) | fw11.3-WT Septum and Placenta, 15 Days Post Anthesis | 0 |
| S0793 | Rio Grande (fw11.3-WT) | fw11.3-WT Columella, 15 Days Post Anthesis | 0.15 |
| S0794 | Rio Grande (fw11.3-WT) | fw11.3-WT Pericarp, 25 Days Post Anthesis | 0 |
| S0795 | Rio Grande (fw11.3-WT) | fw11.3-WT Septum and Placenta, 25 Days Post Anthesis | 0 |
| S0796 | Rio Grande (fw11.3-WT) | fw11.3-WT Columella, 25 Days Post Anthesis | 0.2 |
| S0797 | Rio Grande (fw11.3-WT) | fw11.3-WT Pericarp, 33 Days Post Anthesis | 0 |
| S0798 | Rio Grande (fw11.3-WT) | fw11.3-WT Septum and Placenta, 33 Days Post Anthesis | 0 |
| S0799 | Rio Grande (fw11.3-WT) | fw11.3-WT Columella, 33 Days Post Anthesis | 0 |
| S0800 | Rio Grande (fw11.3-WT) | fw11.3-WT Pericarp, 4 Days Post Anthesis | 0 |
| S0801 | Rio Grande (fw11.3-WT) | fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis | 0.05 |
| S0802 | Rio Grande (fw11.3-WT) | fw11.3-WT Pericarp, 7 Days Post Anthesis | 0 |
| S0803 | Rio Grande (fw11.3-WT) | fw11.3-WT Septum and Placenta, 7 Days Post Anthesis | 0 |
| S0804 | Rio Grande (fw11.3-WT) | fw11.3-WT Columella, 7 Days Post Anthesis | 0 |
| S0805 | Rio Grande (fw11.3-WT) | fw11.3-WT Pericarp, Turning | 0 |
| S0806 | Rio Grande (fw11.3-WT) | fw11.3-WT Septum and Placenta, Turning | 0 |
| S0807 | Rio Grande (fw11.3-WT) | fw11.3-WT Columella, Turning | 0.27 |
Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background
| sample ID | genotype | description | RPM |
|---|
| S0808 | Sun1642 (sun-WT) | SA3 Pericarp and exocarp, 4 Days Post Anthesis | 0 |
| S0809 | Sun1642 (sun-WT) | SA3 Septum and seeds, 4 Days Post Anthesis | 0 |
| S0810 | Sun1642 (sun-WT) | SA3 Pericarp, 7 Days Post Anthesis | 0 |
| S0811 | Sun1642 (sun-WT) | SA3 Septum, 7 Days Post Anthesis | 0 |
| S0812 | Sun1642 (sun-WT) | SA3 Seeds, 7 Days Post Anthesis | 0.02 |
| S0813 | Sun1642 (sun-WT) | SA3 Pericarp, 10 Days Post Anthesis | 0.02 |
| S0814 | Sun1642 (sun-WT) | SA3 Septum, 10 Days Post Anthesis | 0.09 |
| S0815 | Sun1642 (sun-WT) | SA3 Seeds, 10 Days Post Anthesis | 0.04 |
| S0816 | Sun1642 (sun-D) | SA4 Pericarp and exocarp, 4 Days Post Anthesis | 0.03 |
| S0817 | Sun1642 (sun-D) | SA4 Septum and seeds, 4 Days Post Anthesis | 0 |
| S0818 | Sun1642 (sun-D) | SA4 Pericarp, 7 Days Post Anthesis | 0 |
| S0819 | Sun1642 (sun-D) | SA4 Septum, 7 Days Post Anthesis | 0.06 |
| S0820 | Sun1642 (sun-D) | SA4 Seeds, 7 Days Post Anthesis | 0.04 |
| S0821 | Sun1642 (sun-D) | SA4 Pericarp, 10 Days Post Anthesis | 0.03 |
| S0822 | Sun1642 (sun-D) | SA4 Septum, 10 Days Post Anthesis | 0.07 |
| S0823 | Sun1642 (sun-D) | SA4 Seeds, 10 Days Post Anthesis | 0 |
Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs
| sample ID | genotype | description | RPM |
|---|
| S0824 | VF36 | fruit, red ripe, VF36 | 0.22 |
| S0825 | LA3882 | fruit, red ripe, S. lycopersicoides IL LA3882 | 2.85 |
| S0826 | LA3886 | fruit, red ripe, S. lycopersicoides IL LA3886 | 0.53 |
| S0827 | LA3892 | fruit, red ripe, S. lycopersicoides IL LA3892 | 0.3 |
| S0828 | LA4230 | fruit, red ripe, S. lycopersicoides IL LA4230 | 0.25 |
| S0829 | LA4231 | fruit, red ripe, S. lycopersicoides IL LA4231 | 1.31 |
| S0830 | LA4232 | fruit, red ripe, S. lycopersicoides IL LA4232 | 0.84 |
| S0831 | LA4233 | fruit, red ripe, S. lycopersicoides IL LA4233 | 0.24 |
| S0832 | LA4234A | fruit, red ripe, S. lycopersicoides IL LA4234A | 0.86 |
| S0833 | LA4234B | fruit, red ripe, S. lycopersicoides IL LA4234B | 0.28 |
| S0834 | LA4235 | fruit, red ripe, S. lycopersicoides IL LA4235 | 0.92 |
| S0835 | LA4236A | fruit, red ripe, S. lycopersicoides IL LA4236A | 0.16 |
| S0836 | LA4237 | fruit, red ripe, S. lycopersicoides IL LA4237 | 0.62 |
| S0837 | LA4238 | fruit, red ripe, S. lycopersicoides IL LA4238 | 0.4 |
| S0838 | LA4239 | fruit, red ripe, S. lycopersicoides IL LA4239 | 1.54 |
| S0839 | LA4241A | fruit, red ripe, S. lycopersicoides IL LA4241A | 0.33 |
| S0840 | LA4241B | fruit, red ripe, S. lycopersicoides IL LA4241B | 0 |
| S0841 | LA4242A | fruit, red ripe, S. lycopersicoides IL LA4242A | 0 |
| S0842 | LA4242B | fruit, red ripe, S. lycopersicoides IL LA4242B | 0 |
| S0843 | LA4242C | fruit, red ripe, S. lycopersicoides IL LA4242C | 0.13 |
| S0844 | LA4243 | fruit, red ripe, S. lycopersicoides IL LA4243 | 0.73 |
| S0845 | LA4244 | fruit, red ripe, S. lycopersicoides IL LA4244 | 0.28 |
| S0846 | LA4245 | fruit, red ripe, S. lycopersicoides IL LA4245 | 0.22 |
| S0847 | LA4247 | fruit, red ripe, S. lycopersicoides IL LA4247 | 0.16 |
| S0848 | LA4248 | fruit, red ripe, S. lycopersicoides IL LA4248 | 0.3 |
| S0849 | LA4249A | fruit, red ripe, S. lycopersicoides IL LA4249A | 0.81 |
| S0850 | LA4249B | fruit, red ripe, S. lycopersicoides IL LA4249B | 0.83 |
| S0851 | LA4250A | fruit, red ripe, S. lycopersicoides IL LA4250A | 0 |
| S0852 | LA4250B | fruit, red ripe, S. lycopersicoides IL LA4250B | 0.33 |
| S0853 | LA4250C | fruit, red ripe, S. lycopersicoides IL LA4250C | 0 |
| S0854 | LA4251 | fruit, red ripe, S. lycopersicoides IL LA4251 | 0 |
| S0855 | LA4252A | fruit, red ripe, S. lycopersicoides IL LA4252A | 0.16 |
| S0856 | LA4252B | fruit, red ripe, S. lycopersicoides IL LA4252B | 0 |
| S0857 | LA4252C | fruit, red ripe, S. lycopersicoides IL LA4252C | 0 |
| S0858 | LA4252E | fruit, red ripe, S. lycopersicoides IL LA4252E | 0.71 |
| S0859 | LA4252F | fruit, red ripe, S. lycopersicoides IL LA4252F | 0 |
| S0860 | LA4253 | fruit, red ripe, S. lycopersicoides IL LA4253 | 0.25 |
| S0861 | LA4254 | fruit, red ripe, S. lycopersicoides IL LA4254 | 0 |
| S0862 | LA4255 | fruit, red ripe, S. lycopersicoides IL LA4255 | 0 |
| S0863 | LA4256 | fruit, red ripe, S. lycopersicoides IL LA4256 | 0 |
| S0864 | LA4257 | fruit, red ripe, S. lycopersicoides IL LA4257 | 0.22 |
| S0865 | LA4258 | fruit, red ripe, S. lycopersicoides IL LA4258 | 0.89 |
| S0866 | LA4260 | fruit, red ripe, S. lycopersicoides IL LA4260 | 0.2 |
| S0867 | LA4262A | fruit, red ripe, S. lycopersicoides IL LA4262A | 0.4 |
| S0868 | LA4262B | fruit, red ripe, S. lycopersicoides IL LA4262B | 0.13 |
| S0869 | LA4263A | fruit, red ripe, S. lycopersicoides IL LA4263A | 0.16 |
| S0870 | LA4263B | fruit, red ripe, S. lycopersicoides IL LA4263B | 0 |
| S0871 | LA4263C | fruit, red ripe, S. lycopersicoides IL LA4263C | 0.32 |
| S0872 | LA4263D | fruit, red ripe, S. lycopersicoides IL LA4263D | 0.42 |
| S0873 | LA4264A | fruit, red ripe, S. lycopersicoides IL LA4264A | 0 |
| S0874 | LA4264B | fruit, red ripe, S. lycopersicoides IL LA4264B | 0.17 |
| S0875 | LA4266A | fruit, red ripe, S. lycopersicoides IL LA4266A | 0.44 |
| S0876 | LA4266B | fruit, red ripe, S. lycopersicoides IL LA4266B | 0 |
| S0877 | LA4268 | fruit, red ripe, S. lycopersicoides IL LA4268 | 0.19 |
| S0878 | LA4269 | fruit, red ripe, S. lycopersicoides IL LA4269 | 0.45 |
| S0879 | LA4270A | fruit, red ripe, S. lycopersicoides IL LA4270A | 0.16 |
| S0880 | LA4270B | fruit, red ripe, S. lycopersicoides IL LA4270B | 0.66 |
| S0881 | LA4272 | fruit, red ripe, S. lycopersicoides IL LA4272 | 0.12 |
| S0882 | LA4273 | fruit, red ripe, S. lycopersicoides IL LA4273 | 0.68 |
| S0883 | LA4274 | fruit, red ripe, S. lycopersicoides IL LA4274 | 0.52 |
| S0884 | LA4275 | fruit, red ripe, S. lycopersicoides IL LA4275 | 0.13 |
| S0885 | LA4276A | fruit, red ripe, S. lycopersicoides IL LA4276A | 0.6 |
| S0886 | LA4276B | fruit, red ripe, S. lycopersicoides IL LA4276B | 0 |
| S0887 | LA4276C | fruit, red ripe, S. lycopersicoides IL LA4276C | 0 |
| S0888 | LA4276D | fruit, red ripe, S. lycopersicoides IL LA4276D | 0 |
| S0889 | LA4277 | fruit, red ripe, S. lycopersicoides IL LA4277 | 2.24 |
| S0890 | LA4277B | fruit, red ripe, S. lycopersicoides IL LA4277B | 2.56 |
| S0891 | LA4277C | fruit, red ripe, S. lycopersicoides IL LA4277C | 0.86 |
| S0892 | LA4278A | fruit, red ripe, S. lycopersicoides IL LA4278A | 1.09 |
| S0893 | LA4278B | fruit, red ripe, S. lycopersicoides IL LA4278B | 1.32 |
| S0894 | LA4279 | fruit, red ripe, S. lycopersicoides IL LA4279 | 0.15 |
| S0895 | LA4280 | fruit, red ripe, S. lycopersicoides IL LA4280 | 0.27 |
| S0896 | LA4281A | fruit, red ripe, S. lycopersicoides IL LA4281A | 0.14 |
| S0897 | LA4281B | fruit, red ripe, S. lycopersicoides IL LA4281B | 0.21 |
| S0898 | LA4281C | fruit, red ripe, S. lycopersicoides IL LA4281C | 0 |
| S0899 | LA4281D | fruit, red ripe, S. lycopersicoides IL LA4281D | 0.12 |
| S0900 | LA4281E | fruit, red ripe, S. lycopersicoides IL LA4281E | 0.24 |
| S0901 | LA4282A | fruit, red ripe, S. lycopersicoides IL LA4282A | 0.13 |
| S0902 | LA4282B | fruit, red ripe, S. lycopersicoides IL LA4282B | 0 |
| S0903 | LA4282C | fruit, red ripe, S. lycopersicoides IL LA4282C | 0.16 |
| S0904 | LA4284 | fruit, red ripe, S. lycopersicoides IL LA4284 | 0.23 |
| S0905 | LA4294A | fruit, red ripe, S. lycopersicoides IL LA4294A | 0.11 |
| S0906 | LA4294B | fruit, red ripe, S. lycopersicoides IL LA4294B | 0.82 |
| S0907 | LA4295 | fruit, red ripe, S. lycopersicoides IL LA4295 | 0.18 |
| S0908 | LA4296 | fruit, red ripe, S. lycopersicoides IL LA4296 | 0.16 |
| S0909 | LA4297 | fruit, red ripe, S. lycopersicoides IL LA4297 | 0 |
| S0910 | LA4298 | fruit, red ripe, S. lycopersicoides IL LA4298 | 1.56 |
| S0911 | LA4299 | fruit, red ripe, S. lycopersicoides IL LA4299 | 0 |
| S0912 | LA4300A | fruit, red ripe, S. lycopersicoides IL LA4300A | 0.45 |
| S0913 | LA4300B | fruit, red ripe, S. lycopersicoides IL LA4300B | 0 |
| S0914 | LA4301A | fruit, red ripe, S. lycopersicoides IL LA4301A | 0.41 |
| S0915 | LA4303 | fruit, red ripe, S. lycopersicoides IL LA4303 | 0 |
| S0916 | LA4305 | fruit, red ripe, S. lycopersicoides IL LA4305 | 0.47 |
| S0917 | LA4306A | fruit, red ripe, S. lycopersicoides IL LA4306A | 0 |
| S0918 | LA4306B | fruit, red ripe, S. lycopersicoides IL LA4306B | 0 |
| S0919 | LA4307 | fruit, red ripe, S. lycopersicoides IL LA4307 | 0 |
| S0920 | LA4308 | fruit, red ripe, S. lycopersicoides IL LA4308 | 0 |
| S0921 | LA4308A | fruit, red ripe, S. lycopersicoides IL LA4308A | 0.15 |
| S0922 | LA4309 | fruit, red ripe, S. lycopersicoides IL LA4309 | 0 |
| S0923 | LA4310 | fruit, red ripe, S. lycopersicoides IL LA4310 | 0.16 |
| S0924 | LA4311 | fruit, red ripe, S. lycopersicoides IL LA4311 | 0 |
| S0925 | LA4312A | fruit, red ripe, S. lycopersicoides IL LA4312A | 0.63 |
| S0926 | LA4312B | fruit, red ripe, S. lycopersicoides IL LA4312B | 0.46 |
| S0927 | LA4313A | fruit, red ripe, S. lycopersicoides IL LA4313A | 0 |
| S0928 | LA4313B | fruit, red ripe, S. lycopersicoides IL LA4313B | 0.15 |
Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs
| sample ID | genotype | description | RPM |
|---|
| S0953 | LA2093 | fruit, red ripe, S. pimpinellifolium LA2093 | 0.41 |
| S0954 | NCEBR1 | fruit, red ripe, S. lycopersicum NCEBR1 | 1.6 |
| S0955 | RIL-1 | fruit, red ripe, S. pimpinellifolium RIL-1 | 0.13 |
| S0956 | RIL-3 | fruit, red ripe, S. pimpinellifolium RIL-3 | 0.91 |
| S0957 | RIL-4 | fruit, red ripe, S. pimpinellifolium RIL-4 | 0 |
| S0958 | RIL-5 | fruit, red ripe, S. pimpinellifolium RIL-5 | 0.16 |
| S0959 | RIL-6 | fruit, red ripe, S. pimpinellifolium RIL-6 | 0 |
| S0960 | RIL-7 | fruit, red ripe, S. pimpinellifolium RIL-7 | 0 |
| S0961 | RIL-11 | fruit, red ripe, S. pimpinellifolium RIL-11 | 0 |
| S0962 | RIL-12 | fruit, red ripe, S. pimpinellifolium RIL-12 | 0 |
| S0963 | RIL-13 | fruit, red ripe, S. pimpinellifolium RIL-13 | 0.39 |
| S0964 | RIL-14 | fruit, red ripe, S. pimpinellifolium RIL-14 | 0.5 |
| S0965 | RIL-16 | fruit, red ripe, S. pimpinellifolium RIL-16 | 0.21 |
| S0966 | RIL-18 | fruit, red ripe, S. pimpinellifolium RIL-18 | 0.76 |
| S0967 | RIL-19 | fruit, red ripe, S. pimpinellifolium RIL-19 | 0 |
| S0968 | RIL-20 | fruit, red ripe, S. pimpinellifolium RIL-20 | 1.44 |
| S0969 | RIL-21 | fruit, red ripe, S. pimpinellifolium RIL-21 | 0.55 |
| S0970 | RIL-22 | fruit, red ripe, S. pimpinellifolium RIL-22 | 0.56 |
| S0971 | RIL-23 | fruit, red ripe, S. pimpinellifolium RIL-23 | 0.6 |
| S0972 | RIL-24 | fruit, red ripe, S. pimpinellifolium RIL-24 | 0 |
| S0973 | RIL-25 | fruit, red ripe, S. pimpinellifolium RIL-25 | 1.26 |
| S0974 | RIL-26 | fruit, red ripe, S. pimpinellifolium RIL-26 | 0.92 |
| S0975 | RIL-27 | fruit, red ripe, S. pimpinellifolium RIL-27 | 0 |
| S0976 | RIL-28 | fruit, red ripe, S. pimpinellifolium RIL-28 | 0.63 |
| S0977 | RIL-30 | fruit, red ripe, S. pimpinellifolium RIL-30 | 0.5 |
| S0978 | RIL-31 | fruit, red ripe, S. pimpinellifolium RIL-31 | 0 |
| S0979 | RIL-32 | fruit, red ripe, S. pimpinellifolium RIL-32 | 0 |
| S0980 | RIL-33 | fruit, red ripe, S. pimpinellifolium RIL-33 | 0 |
| S0981 | RIL-34 | fruit, red ripe, S. pimpinellifolium RIL-34 | 0.8 |
| S0982 | RIL-35 | fruit, red ripe, S. pimpinellifolium RIL-35 | 0.37 |
| S0983 | RIL-37 | fruit, red ripe, S. pimpinellifolium RIL-37 | 0 |
| S0984 | RIL-38 | fruit, red ripe, S. pimpinellifolium RIL-38 | 0.3 |
| S0985 | RIL-39 | fruit, red ripe, S. pimpinellifolium RIL-39 | 0 |
| S0986 | RIL-41 | fruit, red ripe, S. pimpinellifolium RIL-41 | 0.47 |
| S0987 | RIL-43 | fruit, red ripe, S. pimpinellifolium RIL-43 | 0.28 |
| S0988 | RIL-45 | fruit, red ripe, S. pimpinellifolium RIL-45 | 0.71 |
| S0989 | RIL-47 | fruit, red ripe, S. pimpinellifolium RIL-47 | 0.22 |
| S0990 | RIL-48 | fruit, red ripe, S. pimpinellifolium RIL-48 | 0 |
| S0991 | RIL-49 | fruit, red ripe, S. pimpinellifolium RIL-49 | 0.51 |
| S0992 | RIL-50 | fruit, red ripe, S. pimpinellifolium RIL-50 | 0 |
| S0993 | RIL-52 | fruit, red ripe, S. pimpinellifolium RIL-52 | 0.43 |
| S0994 | RIL-53 | fruit, red ripe, S. pimpinellifolium RIL-53 | 0 |
| S0995 | RIL-54 | fruit, red ripe, S. pimpinellifolium RIL-54 | 1.34 |
| S0996 | RIL-55 | fruit, red ripe, S. pimpinellifolium RIL-55 | 0.48 |
| S0997 | RIL-56 | fruit, red ripe, S. pimpinellifolium RIL-56 | 0.25 |
| S0998 | RIL-57 | fruit, red ripe, S. pimpinellifolium RIL-57 | 0.99 |
| S0999 | RIL-58 | fruit, red ripe, S. pimpinellifolium RIL-58 | 0.13 |
| S1000 | RIL-62 | fruit, red ripe, S. pimpinellifolium RIL-62 | 0.88 |
| S1001 | RIL-63 | fruit, red ripe, S. pimpinellifolium RIL-63 | 0.77 |
| S1002 | RIL-65 | fruit, red ripe, S. pimpinellifolium RIL-65 | 0.2 |
| S1003 | RIL-66 | fruit, red ripe, S. pimpinellifolium RIL-66 | 0.29 |
| S1004 | RIL-67 | fruit, red ripe, S. pimpinellifolium RIL-67 | 0.48 |
| S1005 | RIL-68 | fruit, red ripe, S. pimpinellifolium RIL-68 | 0.44 |
| S1006 | RIL-69 | fruit, red ripe, S. pimpinellifolium RIL-69 | 1.22 |
| S1007 | RIL-71 | fruit, red ripe, S. pimpinellifolium RIL-71 | 0.56 |
| S1008 | RIL-72 | fruit, red ripe, S. pimpinellifolium RIL-72 | 0.42 |
| S1009 | RIL-73 | fruit, red ripe, S. pimpinellifolium RIL-73 | 0 |
| S1010 | RIL-75 | fruit, red ripe, S. pimpinellifolium RIL-75 | 1.47 |
| S1011 | RIL-76 | fruit, red ripe, S. pimpinellifolium RIL-76 | 0.59 |
| S1012 | RIL-77 | fruit, red ripe, S. pimpinellifolium RIL-77 | 0 |
| S1013 | RIL-78 | fruit, red ripe, S. pimpinellifolium RIL-78 | 0.13 |
| S1014 | RIL-79 | fruit, red ripe, S. pimpinellifolium RIL-79 | 0 |
| S1015 | RIL-80 | fruit, red ripe, S. pimpinellifolium RIL-80 | 0.21 |
| S1016 | RIL-81 | fruit, red ripe, S. pimpinellifolium RIL-81 | 0.36 |
| S1017 | RIL-84 | fruit, red ripe, S. pimpinellifolium RIL-84 | 0.16 |
| S1018 | RIL-85 | fruit, red ripe, S. pimpinellifolium RIL-85 | 0 |
| S1019 | RIL-88 | fruit, red ripe, S. pimpinellifolium RIL-88 | 0.32 |
| S1020 | RIL-90 | fruit, red ripe, S. pimpinellifolium RIL-90 | 0.25 |
| S1021 | RIL-91 | fruit, red ripe, S. pimpinellifolium RIL-91 | 0 |
| S1022 | RIL-95 | fruit, red ripe, S. pimpinellifolium RIL-95 | 0.25 |
| S1023 | RIL-96 | fruit, red ripe, S. pimpinellifolium RIL-96 | 0.64 |
| S1024 | RIL-97 | fruit, red ripe, S. pimpinellifolium RIL-97 | 0.36 |
| S1025 | RIL-98 | fruit, red ripe, S. pimpinellifolium RIL-98 | 1.71 |
| S1026 | RIL-99 | fruit, red ripe, S. pimpinellifolium RIL-99 | 0 |
| S1027 | RIL-100 | fruit, red ripe, S. pimpinellifolium RIL-100 | 0.85 |
| S1028 | RIL-101 | fruit, red ripe, S. pimpinellifolium RIL-101 | 0 |
| S1029 | RIL-102 | fruit, red ripe, S. pimpinellifolium RIL-102 | 0.18 |
| S1030 | RIL-103 | fruit, red ripe, S. pimpinellifolium RIL-103 | 0 |
| S1031 | RIL-105 | fruit, red ripe, S. pimpinellifolium RIL-105 | 0.6 |
| S1032 | RIL-107 | fruit, red ripe, S. pimpinellifolium RIL-107 | 0.51 |
| S1033 | RIL-108 | fruit, red ripe, S. pimpinellifolium RIL-108 | 0.25 |
| S1034 | RIL-109 | fruit, red ripe, S. pimpinellifolium RIL-109 | 0.34 |
| S1035 | RIL-111 | fruit, red ripe, S. pimpinellifolium RIL-111 | 0 |
| S1036 | RIL-112 | fruit, red ripe, S. pimpinellifolium RIL-112 | 0.1 |
| S1037 | RIL-113 | fruit, red ripe, S. pimpinellifolium RIL-113 | 0.63 |
| S1038 | RIL-114 | fruit, red ripe, S. pimpinellifolium RIL-114 | 0 |
| S1039 | RIL-115 | fruit, red ripe, S. pimpinellifolium RIL-115 | 0.44 |
| S1040 | RIL-116 | fruit, red ripe, S. pimpinellifolium RIL-116 | 0.22 |
| S1041 | RIL-117 | fruit, red ripe, S. pimpinellifolium RIL-117 | 0.19 |
| S1042 | RIL-118 | fruit, red ripe, S. pimpinellifolium RIL-118 | 0.11 |
| S1043 | RIL-120 | fruit, red ripe, S. pimpinellifolium RIL-120 | 0.58 |
| S1044 | RIL-121 | fruit, red ripe, S. pimpinellifolium RIL-121 | 0.49 |
| S1045 | RIL-122 | fruit, red ripe, S. pimpinellifolium RIL-122 | 0.32 |
| S1046 | RIL-123 | fruit, red ripe, S. pimpinellifolium RIL-123 | 0.22 |
| S1047 | RIL-124 | fruit, red ripe, S. pimpinellifolium RIL-124 | 0.67 |
| S1048 | RIL-125 | fruit, red ripe, S. pimpinellifolium RIL-125 | 1.41 |
| S1049 | RIL-126 | fruit, red ripe, S. pimpinellifolium RIL-126 | 0 |
| S1050 | RIL-128 | fruit, red ripe, S. pimpinellifolium RIL-128 | 0 |
| S1051 | RIL-129 | fruit, red ripe, S. pimpinellifolium RIL-129 | 0 |
| S1052 | RIL-130 | fruit, red ripe, S. pimpinellifolium RIL-130 | 0.73 |
| S1053 | RIL-131 | fruit, red ripe, S. pimpinellifolium RIL-131 | 0.8 |
| S1054 | RIL-132 | fruit, red ripe, S. pimpinellifolium RIL-132 | 0.49 |
| S1055 | RIL-133 | fruit, red ripe, S. pimpinellifolium RIL-133 | 0.18 |
| S1056 | RIL-134 | fruit, red ripe, S. pimpinellifolium RIL-134 | 0.29 |
| S1057 | RIL-135 | fruit, red ripe, S. pimpinellifolium RIL-135 | 0.76 |
| S1058 | RIL-137 | fruit, red ripe, S. pimpinellifolium RIL-137 | 0.74 |
| S1059 | RIL-139 | fruit, red ripe, S. pimpinellifolium RIL-139 | 1.61 |
| S1060 | RIL-140 | fruit, red ripe, S. pimpinellifolium RIL-140 | 1.23 |
| S1061 | RIL-142 | fruit, red ripe, S. pimpinellifolium RIL-142 | 0.08 |
| S1062 | RIL-143 | fruit, red ripe, S. pimpinellifolium RIL-143 | 0.43 |
| S1063 | RIL-144 | fruit, red ripe, S. pimpinellifolium RIL-144 | 1.6 |
| S1064 | RIL-145 | fruit, red ripe, S. pimpinellifolium RIL-145 | 0.08 |
| S1065 | RIL-146 | fruit, red ripe, S. pimpinellifolium RIL-146 | 2.14 |
| S1066 | RIL-147 | fruit, red ripe, S. pimpinellifolium RIL-147 | 0.34 |
| S1067 | RIL-148 | fruit, red ripe, S. pimpinellifolium RIL-148 | 0.16 |
| S1068 | RIL-149 | fruit, red ripe, S. pimpinellifolium RIL-149 | 0.24 |
| S1069 | RIL-150 | fruit, red ripe, S. pimpinellifolium RIL-150 | 0.24 |
| S1070 | RIL-151 | fruit, red ripe, S. pimpinellifolium RIL-151 | 0 |
| S1071 | RIL-152 | fruit, red ripe, S. pimpinellifolium RIL-152 | 0.26 |
| S1072 | RIL-153 | fruit, red ripe, S. pimpinellifolium RIL-153 | 0 |
| S1073 | RIL-154 | fruit, red ripe, S. pimpinellifolium RIL-154 | 0.49 |
| S1074 | RIL-155 | fruit, red ripe, S. pimpinellifolium RIL-155 | 0 |
| S1075 | RIL-156 | fruit, red ripe, S. pimpinellifolium RIL-156 | 1.56 |
| S1076 | RIL-159 | fruit, red ripe, S. pimpinellifolium RIL-159 | 0.38 |
| S1077 | RIL-160 | fruit, red ripe, S. pimpinellifolium RIL-160 | 0.3 |
| S1078 | RIL-161 | fruit, red ripe, S. pimpinellifolium RIL-161 | 0.2 |
| S1079 | RIL-162 | fruit, red ripe, S. pimpinellifolium RIL-162 | 0.81 |
| S1080 | RIL-164 | fruit, red ripe, S. pimpinellifolium RIL-164 | 0.26 |
| S1081 | RIL-165 | fruit, red ripe, S. pimpinellifolium RIL-165 | 0 |
| S1082 | RIL-167 | fruit, red ripe, S. pimpinellifolium RIL-167 | 0.76 |
| S1083 | RIL-168 | fruit, red ripe, S. pimpinellifolium RIL-168 | 0 |
| S1084 | RIL-169 | fruit, red ripe, S. pimpinellifolium RIL-169 | 0 |
| S1085 | RIL-171 | fruit, red ripe, S. pimpinellifolium RIL-171 | 0.51 |
| S1086 | RIL-172 | fruit, red ripe, S. pimpinellifolium RIL-172 | 0.41 |
Experiment: Transcriptome profiling of fruit of cultivated and wild tomatoes
| sample ID | genotype | description | RPM |
|---|
| S1107 | LA0816 (VF-145) | LA0816 immature green fruit | 3.77 |
| S1108 | LA0816 (VF-145) | LA0816 mature green fruit | 4.91 |
| S1109 | LA0816 (VF-145) | LA0816 breaker fruit | 4.15 |
| S1110 | LA0816 (VF-145) | LA0816 ripe fruit | 23.73 |
| S1111 | LA1563 | LA1563 immature green fruit | 2.12 |
| S1112 | LA1563 | LA1563 mature green fruit | 3.24 |
| S1113 | LA1563 | LA1563 breaker fruit | 2.55 |
| S1114 | LA1563 | LA1563 ripe fruit | 4.22 |
| S1115 | BD-MP | BD-MP immature green fruit | 0.81 |
| S1116 | BD-MP | BD-MP mature green fruit | 4.26 |
| S1117 | BD-MP | BD-MP breaker fruit | 4.17 |
| S1118 | BD-MP | BD-MP ripe fruit | 4.58 |
| S1119 | BD-MT | BD-MT immature green fruit | 2.1 |
| S1120 | BD-MT | BD-MT mature green fruit | 3.9 |
| S1121 | BD-MT | BD-MT breaker fruit | 4.06 |
| S1122 | BD-MT | BD-MT ripe fruit | 8.63 |
| S1123 | LA1306 | LA1306 immature green fruit | 0 |
| S1124 | LA1306 | LA1306 mature green fruit | 0 |
| S1125 | LA1306 | LA1306 breaker fruit | 0 |
| S1126 | LA1306 | LA1306 ripe fruit | 0 |
| S1127 | LA1412 | LA1412 immature green fruit | 0 |
| S1128 | LA1412 | LA1412 mature green fruit | 0 |
| S1129 | LA1412 | LA1412 breaker fruit | 0 |
| S1130 | LA1412 | LA1412 ripe fruit | 0 |
| S1131 | LA1586 | LA1586 immature green fruit | 0 |
| S1132 | LA1586 | LA1586 mature green fruit | 0 |
| S1133 | LA1586 | LA1586 breaker fruit | 0 |
| S1134 | LA1586 | LA1586 ripe fruit | 0 |
| S1135 | LA1589 | LA1589 immature green fruit | 0 |
| S1136 | LA1589 | LA1589 mature green fruit | 0 |
| S1137 | LA1589 | LA1589 breaker fruit | 0 |
| S1138 | LA1589 | LA1589 ripe fruit | 0 |
| S1139 | LA1028 | LA1028 immature green fruit | 0.45 |
| S1141 | LA1028 | LA1028 breaker fruit | 0 |
| S1142 | LA1028 | LA1028 ripe fruit | 0 |
| S1143 | LA1318 | LA1318 immature green fruit | 0 |
| S1144 | LA1318 | LA1318 mature green fruit | 0 |
| S1145 | LA1318 | LA1318 breaker fruit | 0 |
| S1146 | LA1318 | LA1318 ripe fruit | 0 |
| S1147 | BD-732 | BD-732 immature green fruit | 0 |
| S1148 | BD-732 | BD-732 mature green fruit | 0 |
| S1149 | BD-732 | BD-732 breaker fruit | 0 |
| S1150 | BD-732 | BD-732 ripe fruit | 0 |
| S1151 | LA0407 | LA0407 immature green fruit | 0 |
| S1152 | LA0407 | LA0407 mature green fruit | 0 |
| S1153 | LA0407 | LA0407 breaker fruit | 1.03 |
| S1154 | LA0407 | LA0407 ripe fruit | 5.58 |
| S1155 | LA1777 | LA1777 immature green fruit | 0 |
| S1156 | LA1777 | LA1777 mature green fruit | 0 |
| S1157 | LA1777 | LA1777 breaker fruit | 0 |
| S1158 | LA1777 | LA1777 ripe fruit | 0.64 |
| S1159 | LA0716 | LA0716 immature green fruit | 0 |
| S1160 | LA0716 | LA0716 mature green fruit | 0 |
| S1161 | LA0716 | LA0716 breaker fruit | 0 |
| S1162 | LA0716 | LA0716 ripe fruit | 0 |
| S1163 | PI126431 | PI126431 immature green fruit | 0 |
| S1164 | PI126431 | PI126431 mature green fruit | 0 |
| S1165 | PI126431 | PI126431 breaker fruit | 0 |
| S1166 | PI126431 | PI126431 ripe fruit | 0 |
| S1167 | PI126926 | PI126926 immature green fruit | 0 |
| S1168 | PI126926 | PI126926 mature green fruit | 0 |
| S1169 | PI126926 | PI126926 breaker fruit | 0.45 |
| S1170 | PI126926 | PI126926 ripe fruit | 0.48 |
| S1171 | LA1584 | LA1584 ripe fruit | 3.15 |
| S1172 | LA2173 | LA2173 ripe fruit | 5.99 |
| S1173 | LA1301 | LA1301 ripe fruit | 7.15 |
| S1174 | LA1335 | LA1335 ripe fruit | 16.53 |
| S1175 | LA1371 | LA1371 ripe fruit | 11.18 |
| S1176 | LA1521 | LA1521 ripe fruit | 1.77 |
| S1177 | LA1659 | LA1659 ripe fruit | 11.38 |
| S1178 | LA0722 | LA0722 ripe fruit | 10.32 |
| S1179 | LA1547 | LA1547 ripe fruit | 25.6 |
| S1180 | LA3123 | LA3123 ripe fruit | 29.5 |
| S1181 | LA2096 | LA2096 ripe fruit | 13.09 |
| S1182 | LA1246 | LA1246 ripe fruit | 10.13 |
| S1183 | LA1259 | LA1259 ripe fruit | 20.68 |
| S1184 | LA2093 | LA2093 ripe fruit | 11.81 |
| S1185 | LA0418 | LA0418 ripe fruit | 8.16 |
| S1186 | LA2850 | LA2850 ripe fruit | 15.97 |
| S1187 | LA1043 | LA1043 ripe fruit | 1.3 |
| S1188 | LA0438 | LA0438 ripe fruit | 1.57 |
| S1189 | LA0532 | LA0532 ripe fruit | 0 |
| S1190 | LA1044 | LA1044 ripe fruit | 0.65 |
| S1191 | LA1452 | LA1452 ripe fruit | 1.36 |
| S1192 | LA0528 | LA0528 ripe fruit | 0.65 |
| S1193 | LA0530 | LA0530 ripe fruit | 0.65 |
| S1194 | LA0480A | LA0480A ripe fruit | 1.57 |
| S1195 | LA0521 | LA0521 ripe fruit | 26.81 |
| S1196 | LA0422 | LA0422 ripe fruit | 8.01 |
| S1197 | LA0529 | LA0529 ripe fruit | 12.22 |
| S1198 | LA1039 | LA1039 ripe fruit | 11.46 |
| S1199 | LA1042 | LA1042 ripe fruit | 11.49 |
| S1200 | LA1407 | LA1407 ripe fruit | 7.5 |
| S1201 | LA1035 | LA1035 ripe fruit | 20.76 |
|
|
