Tomato Functional Genomics Database (TFGD)

Solyc11g013260 expression

Experiment: Transcriptome profiling of pennellii ILs

sample ID	genotype	description	RPM
S0001	M82	fruit, red ripe, M82	97.79
S0002	1-1	fruit, red ripe, S. pennellii IL1-1	61.26
S0003	1-1-2	fruit, red ripe, S. pennellii IL1-1-2	68.65
S0004	1-1-3	fruit, red ripe, S. pennellii IL1-1-3	62.44
S0005	1-2	fruit, red ripe, S. pennellii IL1-2	66.21
S0006	1-3	fruit, red ripe, S. pennellii IL1-3	71.65
S0007	1-4	fruit, red ripe, S. pennellii IL1-4	68.2
S0008	1-4-18	fruit, red ripe, S. pennellii IL1-4-18	80.08
S0009	2-1	fruit, red ripe, S. pennellii IL2-1	81.31
S0010	2-1-1	fruit, red ripe, S. pennellii IL2-1-1	66.22
S0011	2-2	fruit, red ripe, S. pennellii IL2-2	68.46
S0012	2-3	fruit, red ripe, S. pennellii IL2-3	66.82
S0013	2-4	fruit, red ripe, S. pennellii IL2-4	63.43
S0014	2-5	fruit, red ripe, S. pennellii IL2-5	77.94
S0015	2-6	fruit, red ripe, S. pennellii IL2-6	78.41
S0016	2-6-5	fruit, red ripe, S. pennellii IL2-6-5	78.44
S0017	3-1	fruit, red ripe, S. pennellii IL3-1	88.56
S0018	3-2	fruit, red ripe, S. pennellii IL3-2	76.36
S0020	3-4	fruit, red ripe, S. pennellii IL3-4	60.8
S0021	3-5	fruit, red ripe, S. pennellii IL3-5	87.13
S0022	4-1	fruit, red ripe, S. pennellii IL4-1	66.19
S0023	4-1-1	fruit, red ripe, S. pennellii IL4-1-1	71.94
S0024	4-2	fruit, red ripe, S. pennellii IL4-2	69.09
S0025	4-3	fruit, red ripe, S. pennellii IL4-3	58.87
S0026	4-3-2	fruit, red ripe, S. pennellii IL4-3-2	60.96
S0027	4-4	fruit, red ripe, S. pennellii IL4-4	88.78
S0028	5-1	fruit, red ripe, S. pennellii IL5-1	76.72
S0029	5-2	fruit, red ripe, S. pennellii IL5-2	75.74
S0030	5-3	fruit, red ripe, S. pennellii IL5-3	43.09
S0031	5-4	fruit, red ripe, S. pennellii IL5-4	74.34
S0032	5-5	fruit, red ripe, S. pennellii IL5-5	64.66
S0034	6-2	fruit, red ripe, S. pennellii IL6-2	58.89
S0035	6-2-2	fruit, red ripe, S. pennellii IL6-2-2	84.19
S0036	6-3	fruit, red ripe, S. pennellii IL6-3	54.21
S0037	6-4	fruit, red ripe, S. pennellii IL6-4	65.62
S0038	7-1	fruit, red ripe, S. pennellii IL7-1	66.4
S0039	7-2	fruit, red ripe, S. pennellii IL7-2	137.6
S0040	7-3	fruit, red ripe, S. pennellii IL7-3	80.18
S0041	7-4	fruit, red ripe, S. pennellii IL7-4	99.17
S0042	7-4-1	fruit, red ripe, S. pennellii IL7-4-1	77.88
S0043	7-5	fruit, red ripe, S. pennellii IL7-5	111.27
S0044	7-5-5	fruit, red ripe, S. pennellii IL7-5-5	70.31
S0045	8-1	fruit, red ripe, S. pennellii IL8-1	75.6
S0046	8-1-1	fruit, red ripe, S. pennellii IL8-1-1	64.87
S0047	8-1-5	fruit, red ripe, S. pennellii IL8-1-5	63.58
S0048	8-2	fruit, red ripe, S. pennellii IL8-2	67.38
S0049	8-2-1	fruit, red ripe, S. pennellii IL8-2-1	76.27
S0050	8-3	fruit, red ripe, S. pennellii IL8-3	68.61
S0051	8-3-1	fruit, red ripe, S. pennellii IL8-3-1	71.9
S0052	9-1	fruit, red ripe, S. pennellii IL9-1	58.35
S0053	9-1-2	fruit, red ripe, S. pennellii IL9-1-2	74.38
S0054	9-1-3	fruit, red ripe, S. pennellii IL9-1-3	54.46
S0055	9-2	fruit, red ripe, S. pennellii IL9-2	70.75
S0056	9-2-5	fruit, red ripe, S. pennellii IL9-2-5	116.38
S0057	9-2-6	fruit, red ripe, S. pennellii IL9-2-6	61.05
S0058	9-3	fruit, red ripe, S. pennellii IL9-3	139.25
S0059	9-3-1	fruit, red ripe, S. pennellii IL9-3-1	57.84
S0060	9-3-2	fruit, red ripe, S. pennellii IL9-3-2	70.32
S0061	10-1	fruit, red ripe, S. pennellii IL10-1	76.55
S0062	10-1-1	fruit, red ripe, S. pennellii IL10-1-1	81.26
S0063	10-2	fruit, red ripe, S. pennellii IL10-2	75.87
S0064	10-2-2	fruit, red ripe, S. pennellii IL10-2-2	69.21
S0065	10-3	fruit, red ripe, S. pennellii IL10-3	71.89
S0066	11-1	fruit, red ripe, S. pennellii IL11-1	60.1
S0067	11-2	fruit, red ripe, S. pennellii IL11-2	38.16
S0068	11-3	fruit, red ripe, S. pennellii IL11-3	65.42
S0069	11-4	fruit, red ripe, S. pennellii IL11-4	74.67
S0070	11-4-1	fruit, red ripe, S. pennellii IL11-4-1	68.36
S0071	12-1	fruit, red ripe, S. pennellii IL12-1	77.53
S0072	12-1-1	fruit, red ripe, S. pennellii IL12-1-1	107.04
S0073	12-2	fruit, red ripe, S. pennellii IL12-2	82.5
S0074	12-3	fruit, red ripe, S. pennellii IL12-3	62.27
S0075	12-3-1	fruit, red ripe, S. pennellii IL12-3-1	76.86
S0076	12-4	fruit, red ripe, S. pennellii IL12-4	73.78
S0077	12-4-1	fruit, red ripe, S. pennellii IL12-4-1	64

Experiment: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium

sample ID	genotype	description	RPM
S0584	Heinz	Heinz unopened flower buds	37.01
S0585	Heinz	Heinz fully opened flowers	47.27
S0586	Heinz	Heinz 1 cm fruits	72.68
S0587	Heinz	Heinz 2 cm fruits	70.28
S0588	Heinz	Heinz 3 cm fruits	84.01
S0589	Heinz	Heinz mature green fruits	65.73
S0590	Heinz	Heinz breaker fruits	76.95
S0591	Heinz	Heinz breaker+10 fruits	87.9
S0592	Heinz	Heinz roots	70.29
S0593	Heinz	Heinz leaves	25.33
S0594		pimpinellifolium immature green fruits	59.74
S0595		pimpinellifolium breaker fruits	62.31
S0596		pimpinellifolium breaker+5 fruits	70.22
S0597		pimpinellifolium leaves	50.18

Experiment: Transcriptome profiling of young flower buds of WT, sun, ovate and fs8.1 NILs in the LA1589 background

sample ID	genotype	description	RPM
S0929	LA1589	LA1589 young flower buds at 4 days post-initiation of floral meristem	72.38
S0930	LA1589	LA1589 young flower buds at 6 days post-initiation of floral meristem	63.63
S0931	LA1589	LA1589 young flower buds at 8 days post-initiation of floral meristem	74.54
S0932	LA1589	LA1589 young flower buds at 10 days post-initiation of floral meristem	95.41
S0933	LA1589	LA1589 young flower buds at 13 days post-initiation of floral meristem	75.54
S0934	LA1589	LA1589 young flower buds at 16 days post-initiation of floral meristem	109.41
S0935	sun NIL in the LA1589 background	sun young flower buds at 4 days post-initiation of floral meristem	66.03
S0936	sun NIL in the LA1589 background	sun young flower buds at 6 days post-initiation of floral meristem	56.73
S0937	sun NIL in the LA1589 background	sun young flower buds at 8 days post-initiation of floral meristem	57.55
S0938	sun NIL in the LA1589 background	sun young flower buds at 10 days post-initiation of floral meristem	82.1
S0939	sun NIL in the LA1589 background	sun young flower buds at 13 days post-initiation of floral meristem	85.31
S0940	sun NIL in the LA1589 background	sun young flower buds at 16 days post-initiation of floral meristem	40.79
S0941	ovate NIL in the LA1589 background	ovate young flower buds at 4 days post-initiation of floral meristem	63.74
S0942	ovate NIL in the LA1589 background	ovate young flower buds at 6 days post-initiation of floral meristem	59.88
S0943	ovate NIL in the LA1589 background	ovate young flower buds at 8 days post-initiation of floral meristem	60.06
S0944	ovate NIL in the LA1589 background	ovate young flower buds at 10 days post-initiation of floral meristem	84.19
S0945	ovate NIL in the LA1589 background	ovate young flower buds at 13 days post-initiation of floral meristem	76.13
S0946	ovate NIL in the LA1589 background	ovate young flower buds at 16 days post-initiation of floral meristem	75.49
S0947	fs8.1 NIL in the LA1589 background	fs8.1 young flower buds at 4 days post-initiation of floral meristem	66.2
S0948	fs8.1 NIL in the LA1589 background	fs8.1 young flower buds at 6 days post-initiation of floral meristem	62.04
S0949	fs8.1 NIL in the LA1589 background	fs8.1 young flower buds at 8 days post-initiation of floral meristem	59.04
S0950	fs8.1 NIL in the LA1589 background	fs8.1 young flower buds at 10 days post-initiation of floral meristem	85.97
S0951	fs8.1 NIL in the LA1589 background	fs8.1 young flower buds at 13 days post-initiation of floral meristem	85.05
S0952	fs8.1 NIL in the LA1589 background	fs8.1 young flower buds at 16 days post-initiation of floral meristem	72.84

Experiment: Transcriptome analysis of various tissues in wild species S. pimpinellifolium, LA1589

sample ID	genotype	description	RPM
S0608	LA1589	anthesis flowers (0DPA)	73
S0609	LA1589	10 days post anthesis fruit (10 DPA1)	145.1
S0610	LA1589	10 days post anthesis fruit 2 (10 DPA2)	156.39
S0611	LA1589	20 days post anthesis fruit (20DPA)	127.97
S0612	LA1589	rippening fruit (33DPA)	174.57
S0613	LA1589	cotyledons (COTYL)	169.73
S0614	LA1589	hypocotyl (HYPO)	127.71
S0615	LA1589	vegitative meristems (MERI)	190.48
S0616	LA1589	mature leaves (ML)	57.91
S0617	LA1589	whole root (ROOT)	143.79
S0618	LA1589	young flower buds (YFB)	171.75
S0619	LA1589	young leaves (YL)	170.39

Experiment: Transcriptome sequencing of tomato leaves treated with different bacteria and PAMPs

sample ID	genotype	description	RPM
S0620	Rio Grande prf3 (deletion in Prf)	mock PAMPs 30 min	18.62
S0621	Rio Grande prf3 (deletion in Prf)	cold shock protein 22 (csp22) 30 min	9.15
S0622	Rio Grande prf3 (deletion in Prf)	flagellin 22 (flg22) 30 min	12.05
S0623	Rio Grande prf3 (deletion in Prf)	flagellin II-28 (flgII-28) 30 min	10.07
S0624	Rio Grande prf3 (deletion in Prf)	Lipopolysaccharides (LPS) 30 min	12.61
S0625	Rio Grande prf3 (deletion in Prf)	Peptidoglycan (PGN) 30 min	10.07
S0626	Rio Grande prf3 (deletion in Prf)	mock PAMPs 6h	63.12
S0627	Rio Grande prf3 (deletion in Prf)	cold shock protein 22 (csp22) 6 h	137.71
S0628	Rio Grande prf3 (deletion in Prf)	flagellin 22 (flg22) 6h	104.64
S0629	Rio Grande prf3 (deletion in Prf)	flagellin II-28 (flgII-28) 6h	118.59
S0630	Rio Grande prf3 (deletion in Prf)	Lipopolysaccharides (LPS) 6 h	98.83
S0631	Rio Grande prf3 (deletion in Prf)	Peptidoglycan (PGN) 6h	77.98
S0632	Rio Grande prf3 (deletion in Prf)	mock bacteria 30 min	17.96
S0633	Rio Grande prf3 (deletion in Prf)	DC3000 30 min	13.69
S0634	Rio Grande prf3 (deletion in Prf)	DC3000ΔhrcQ-U 30 min	12.83
S0635	Rio Grande prf3 (deletion in Prf)	DC3000ΔhrcQ-UΔfliC 30 min	12.59
S0636	Rio Grande prf3 (deletion in Prf)	DC3000Δ28 30 min	13.94
S0637	Rio Grande prf3 (deletion in Prf)	DC3000ΔAvrPtoΔAvrPtoB 30 min	15.51
S0638	Rio Grande prf3 (deletion in Prf)	Pseudomonas fluorescens 30 min	16.47
S0639	Rio Grande prf3 (deletion in Prf)	Pseudomonas putida 30 min	14.39
S0640	Rio Grande prf3 (deletion in Prf)	Agrobacterium tumefaciens 30 min	17.32
S0641	Rio Grande prf3 (deletion in Prf)	mock bacteria 6 h	71.85
S0642	Rio Grande prf3 (deletion in Prf)	DC3000 6 h	94.35
S0643	Rio Grande prf3 (deletion in Prf)	DC3000ΔhrcQ-U 6 h	93.59
S0644	Rio Grande prf3 (deletion in Prf)	DC3000ΔhrcQ-UΔfliC 6 h	59.57
S0645	Rio Grande prf3 (deletion in Prf)	DC3000Δ28 6 h	112.94
S0646	Rio Grande prf3 (deletion in Prf)	DC3000ΔAvrPtoΔAvrPtoB 6 h	97.98
S0647	Rio Grande prf3 (deletion in Prf)	Pseudomonas fluorescens 6 h	130.84
S0648	Rio Grande prf3 (deletion in Prf)	Pseudomonas putida 6 h	145.32
S0649	Rio Grande prf3 (deletion in Prf)	Agrobacterium tumefaciens 6 h	60.23

Experiment: Transcriptome or gene expression of various fruit tissue in FW3.2 NILs

sample ID	genotype	description	RPM
S0671	Yellow Stuffer (cultivated allele of fw3.2)	fw3.2(ys) 5 Days Post Anthesis Pericarp	170.28
S0672	Yellow Stuffer (wild allele of fw3.2)	fw3.2(wt) 5 Days Post Anthesis Pericarp	162.01
S0673	Yellow Stuffer (cultivated allele of fw3.2)	fw3.2(ys) 7 Days Post Anthesis Pericarp	151.64
S0674	Yellow Stuffer (wild allele of fw3.2)	fw3.2(wt) 7 Days Post Anthesis Pericarp	148.55
S0675	Yellow Stuffer (cultivated allele of fw3.2)	fw3.2(ys) 10 Days Post Anthesis Pericarp	155.84
S0676	Yellow Stuffer (wild allele of fw3.2)	fw3.2(wt) 10 Days Post Anthesis Pericarp	146.99
S0677	Yellow Stuffer (cultivated allele of fw3.2)	fw3.2(ys) 5 Days Post Anthesis Seed	168.2
S0678	Yellow Stuffer (wild allele of fw3.2)	fw3.2(wt) 5 Days Post Anthesis Seed	159.95
S0679	Yellow Stuffer (cultivated allele of fw3.2)	fw3.2(ys) 7 Days Post Anthesis Seed	153.73
S0680	Yellow Stuffer (wild allele of fw3.2)	fw3.2(wt) 7 Days Post Anthesis Seed	152.66
S0681	Yellow Stuffer (cultivated allele of fw3.2)	fw3.2(ys) 10 Days Post Anthesis Seed	172.08
S0682	Yellow Stuffer (wild allele of fw3.2)	fw3.2(wt) 10 Days Post Anthesis Seed	172.64
S0683	Yellow Stuffer (cultivated allele of fw3.2)	fw3.2(ys) young flower bud	133.44
S0684	Yellow Stuffer (wild allele of fw3.2)	fw3.2(wt) young flower bud	133.93

Experiment: Tissue-specific transcriptome profiling of Solanum pimpinellifolium ovaries and fruit using LCM-coupled to RNA-seq

sample ID	genotype	description	RPM
S0685	LA1589	LA1589, Ovule 0 dpa (SA1_D0_OV)	251.41
S0686	sun	sun, Ovule 0 dpa (SA2_D0_OV)	239.51
S0687	LA1589	LA1589, Placenta 0 dpa (SA1_D0_PL)	332.76
S0688	sun	sun, Placenta 0 dpa (SA2_D0_PL)	317.48
S0689	LA1589	LA1589, Septum 0 dpa (SA1_D0_SE)	232.36
S0690	sun	sun, Septum 0 dpa (SA2_D0_SE)	236.06
S0691	LA1589	LA1589, Pericarp 0 dpa (SA1_D0_PE)	294.18
S0692	sun	sun, Pericarp 0 dpa (SA2_D0_PE)	262.23
S0693	LA1589	LA1589, Embryo 4 dpa Fruit (SA1_D4_EM)	398.17
S0694	sun	sun, Embryo 4 dpa Fruit (SA2_D4_EM)	659.58
S0695	LA1589	LA1589, Endosperm 4 dpa Fruit (SA1_D4_ENDO)	223.11
S0696	sun	sun, Endosperm 4 dpa Fruit (SA2_D4_ENDO)	257.35
S0697	LA1589	LA1589, Seed Coat 4 dpa Fruit (SA1_D4_SC)	225.57
S0698	sun	sun, Seed Coat 4 dpa Fruit (SA2_D4_SC)	247.83
S0699	LA1589	LA1589, Funiculus 4 dpa Fruit (SA1_D4_FU)	259.19
S0700	sun	sun, Funiculus 4 dpa Fruit (SA2_D4_FU)	369.67
S0701	LA1589	LA1589, Placenta 4 dpa Fruit (SA1_D4_PL)	302.57
S0702	sun	sun, Placenta 4 dpa Fruit (SA2_D4_PL)	375.24
S0703	LA1589	LA1589, Septum 4 dpa Fruit (SA1_D4_SE)	196.71
S0704	sun	sun, Septum 4 dpa Fruit (SA2_D4_SE)	278.32
S0705	LA1589	LA1589, Pericarp 4 dpa Fruit (SA1_D4_PE)	245.65
S0706	sun	sun, Pericarp 4 dpa Fruit (SA2_D4_PE)	314.09

Experiment: Transcriptome sequencing of leaves of resistant (RG-PtoR) and susceptible (RG-prf3 and RG-prf19) tomato plants treated with Pst DC3000

sample ID	genotype	description	RPM
S0740	Rio Grande-PtoR	DC3000 4 h	73.82
S0741	Rio Grande-prf3	DC3000 4 h	70.7
S0742	Rio Grande-prf19	DC3000 4 h	67.2
S0743	Rio Grande-PtoR	DC3000 6 h	143.21
S0744	Rio Grande-prf3	DC3000 6 h	85.38
S0745	Rio Grande-prf19	DC3000 6 h	77.43

Experiment: Transcriptome sequencing of tomato leaves trated with diferent Pst DC3000 mutant strains

sample ID	genotype	description	RPM
S0746	Rio Grande-PtoR	DC3000ΔhopQ1-1 ΔfliC 6 h	113.05
S0747	Rio Grande-PtoR	DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB 6 h	79.23
S0748	Rio Grande-PtoR	DC3000ΔhopQ1-1 ΔavrPto ΔavrPtoB ΔfliC 6 h	58.23

Experiment: Transcriptome profiling of anthesis-stage ovaries from the fs8.1 backcrossed lines in Rio Grande background

sample ID	genotype	description	RPM
S0749	fs8.1, backcrossed line 09S204, BC4F2, Rio Grande background	09S204-ee, ovary(anthesis)	147.97
S0750	WT, backcrossed line 09S204, BC4F2, Rio Grande background	09S204-pp, ovary(anthesis)	151.51
S0751	fs8.1, backcrossed line 09S236, BC3F2, Rio Grande background	09S236-ee, ovary(anthesis)	158.42
S0752	WT, backcrossed line 09S236, BC3F2, Rio Grande background	09S236-pp, ovary(anthesis)	143.19
S0753	fs8.1, backcrossed line 09S237, BC1F4, Rio Grande background	09S237-ee, ovary(anthesis)	110.65
S0754	WT, backcrossed line 09S237, BC1F4, Rio Grande background	09S237-pp, ovary(anthesis)	128.46

Experiment: Domain-wise effect of AvrPto on the tomato transcriptome 6 hours post inoculation

sample ID	genotype	description	RPM
S0755	Rio Grande-prf3	D28E (pCPP45::avrPto) 6 h	91.72
S0756	Rio Grande-prf3	D28E (pCPP45::avrPto I96A) 6 h	117.63
S0757	Rio Grande-prf3	D28E (pCPP45::avrPto 2xA) 6 h	99.02
S0758	Rio Grande-prf3	D28E (pCPP45::avrPto I96A + 2xA) 6 h	134.52
S0759	Rio Grande-prf3	Mock 6 h	49.58

Experiment: Transcriptome sequencing of Pti1 silenced plants after treatment of Pst DC3000ΔAvrPtoΔAvrPtoB

sample ID	genotype	description	RPM
S0658	Rio Grande prf3 (deletion in Prf)	Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 3 h	57.5
S0659	Rio Grande prf3 (deletion in Prf)	hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 3 h	58.02
S0660	Rio Grande prf3 (deletion in Prf)	hpPti1-F27 DC3000ΔAvrPtoΔAvrPtoB 3 h	55.88
S0661	Rio Grande prf3 (deletion in Prf)	Azygous of hpPti1 DC3000ΔAvrPtoΔAvrPtoB 6 h	76.75
S0662	Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F10	hpPti1-F10 DC3000ΔAvrPtoΔAvrPtoB 6 h	75.99
S0663	Rio Grande prf3 (deletion in Prf), hairpin Pti1, line F27	hpPti1-F27 ΔAvrPtoΔAvrPtoB 6 h	76.66

Experiment: Gene expression in IM/FM, 2 dpi, 4 dpi and 6 dpi floral buds of wild type, lc, fas and lc/fas in the LA1589 background

sample ID	genotype	description	RPM
S1087	LA1589	2dpi floral buds	163.92
S1088	lc	2dpi floral buds	171.33
S1089	fas	2dpi floral buds	168.82
S1090	lc/fas	2dpi floral buds	162.9
S1091	LA1589	4dpi floral buds	139.59
S1092	lc	4dpi floral buds	147.92
S1093	fas	4dpi floral buds	143.9
S1094	lc/fas	4dpi floral buds	131.35
S1095	LA1589	6dpi floral buds	146.94
S1096	lc	6dpi floral buds	138.54
S1097	fas	6dpi floral buds	130.22
S1098	lc/fas	6dpi floral buds	137.32
S1099	LA1589	floral and inflorescence meristem	194.22
S1100	lc	floral and inflorescence meristem	203.76
S1101	fas	floral and inflorescence meristem	217.01
S1102	lc/fas	floral and inflorescence meristem	186.47
S1103	LA1589	sympodial shoot apical meristem	199.99
S1104	lc	sympodial shoot apical meristem	162.54
S1105	fas	sympodial shoot apical meristem	175.66
S1106	lc/fas	sympodial shoot apical meristem	169.81

Experiment: RNA-Seq analysis on tomato anthesis flowers of ovate/sov1 NILs in the LA1589 background

sample ID	genotype	description	RPM
S0764	LA1589	LA1589, flowers	30.11
S0765	ovate	ovate, flowers	37.58
S0766	sov1	sov1, flowers	31.91
S0767	ovate/sov1	ovate/sov1, flowers	41.64

Experiment: Transcriptome profiling of three fruit tissues from the fw11.3 NILs in cultivated background

sample ID	genotype	description	RPM
S0768	Rio Grande (fw11.3-D)	fw11.3-D Pericarp, 10 Days Post Anthesis	67.86
S0769	Rio Grande (fw11.3-D)	fw11.3-D Septum and Placenta, 10 Days Post Anthesis	59.75
S0770	Rio Grande (fw11.3-D)	fw11.3-D Columella, 10 Days Post Anthesis	62.09
S0771	Rio Grande (fw11.3-D)	fw11.3-D Pericarp, 15 Days Post Anthesis	65.14
S0772	Rio Grande (fw11.3-D)	fw11.3-D Septum and Placenta, 15 Days Post Anthesis	56.45
S0773	Rio Grande (fw11.3-D)	fw11.3-D Columella, 15 Days Post Anthesis	53.72
S0774	Rio Grande (fw11.3-D)	fw11.3-D Pericarp, 25 Days Post Anthesis	64.35
S0775	Rio Grande (fw11.3-D)	fw11.3-D Septum and Placenta, 25 Days Post Anthesis	39.83
S0776	Rio Grande (fw11.3-D)	fw11.3-D Columella, 25 Days Post Anthesis	56.05
S0777	Rio Grande (fw11.3-D)	fw11.3-D Pericarp, 33 Days Post Anthesis	59.92
S0778	Rio Grande (fw11.3-D)	fw11.3-D Septum and Placenta, 33 Days Post Anthesis	37.1
S0779	Rio Grande (fw11.3-D)	fw11.3-D Columella, 33 Days Post Anthesis	49.8
S0780	Rio Grande (fw11.3-D)	fw11.3-D Pericarp, 4 Days Post Anthesis	73.7
S0781	Rio Grande (fw11.3-D)	fw11.3-D Septum, Placenta and Columella, 4 Days Post Anthesis	72.68
S0782	Rio Grande (fw11.3-D)	fw11.3-D Pericarp, 7 Days Post Anthesis	66.24
S0783	Rio Grande (fw11.3-D)	fw11.3-D Septum and Placenta, 7 Days Post Anthesis	54.52
S0784	Rio Grande (fw11.3-D)	fw11.3-D Columella, 7 Days Post Anthesis	60.19
S0785	Rio Grande (fw11.3-D)	fw11.3-D Pericarp, Turning	60.27
S0786	Rio Grande (fw11.3-D)	fw11.3-D Septum and Placenta, Turning	51.7
S0787	Rio Grande (fw11.3-D)	fw11.3-D Columella, Turning	50.9
S0788	Rio Grande (fw11.3-WT)	fw11.3-WT Pericarp, 10 Days Post Anthesis	60.2
S0789	Rio Grande (fw11.3-WT)	fw11.3-WT Septum and Placenta, 10 Days Post Anthesis	55.85
S0790	Rio Grande (fw11.3-WT)	fw11.3-WT Columella, 10 Days Post Anthesis	55.22
S0791	Rio Grande (fw11.3-WT)	fw11.3-WT Pericarp, 15 Days Post Anthesis	61.96
S0792	Rio Grande (fw11.3-WT)	fw11.3-WT Septum and Placenta, 15 Days Post Anthesis	53.06
S0793	Rio Grande (fw11.3-WT)	fw11.3-WT Columella, 15 Days Post Anthesis	54.21
S0794	Rio Grande (fw11.3-WT)	fw11.3-WT Pericarp, 25 Days Post Anthesis	63.7
S0795	Rio Grande (fw11.3-WT)	fw11.3-WT Septum and Placenta, 25 Days Post Anthesis	41.58
S0796	Rio Grande (fw11.3-WT)	fw11.3-WT Columella, 25 Days Post Anthesis	52.92
S0797	Rio Grande (fw11.3-WT)	fw11.3-WT Pericarp, 33 Days Post Anthesis	59.85
S0798	Rio Grande (fw11.3-WT)	fw11.3-WT Septum and Placenta, 33 Days Post Anthesis	33.37
S0799	Rio Grande (fw11.3-WT)	fw11.3-WT Columella, 33 Days Post Anthesis	50.87
S0800	Rio Grande (fw11.3-WT)	fw11.3-WT Pericarp, 4 Days Post Anthesis	75.58
S0801	Rio Grande (fw11.3-WT)	fw11.3-WT Septum, Placenta and Columella, 4 Days Post Anthesis	69.96
S0802	Rio Grande (fw11.3-WT)	fw11.3-WT Pericarp, 7 Days Post Anthesis	57.08
S0803	Rio Grande (fw11.3-WT)	fw11.3-WT Septum and Placenta, 7 Days Post Anthesis	52.64
S0804	Rio Grande (fw11.3-WT)	fw11.3-WT Columella, 7 Days Post Anthesis	60.51
S0805	Rio Grande (fw11.3-WT)	fw11.3-WT Pericarp, Turning	56.35
S0806	Rio Grande (fw11.3-WT)	fw11.3-WT Septum and Placenta, Turning	53.31
S0807	Rio Grande (fw11.3-WT)	fw11.3-WT Columella, Turning	54.06

Experiment: Transcriptome profiling of three fruit tissues from the sun NILs in cultivated background

sample ID	genotype	description	RPM
S0808	Sun1642 (sun-WT)	SA3 Pericarp and exocarp, 4 Days Post Anthesis	152.43
S0809	Sun1642 (sun-WT)	SA3 Septum and seeds, 4 Days Post Anthesis	142.95
S0810	Sun1642 (sun-WT)	SA3 Pericarp, 7 Days Post Anthesis	164.92
S0811	Sun1642 (sun-WT)	SA3 Septum, 7 Days Post Anthesis	149.95
S0812	Sun1642 (sun-WT)	SA3 Seeds, 7 Days Post Anthesis	141.38
S0813	Sun1642 (sun-WT)	SA3 Pericarp, 10 Days Post Anthesis	182.81
S0814	Sun1642 (sun-WT)	SA3 Septum, 10 Days Post Anthesis	154.95
S0815	Sun1642 (sun-WT)	SA3 Seeds, 10 Days Post Anthesis	174.35
S0816	Sun1642 (sun-D)	SA4 Pericarp and exocarp, 4 Days Post Anthesis	163.14
S0817	Sun1642 (sun-D)	SA4 Septum and seeds, 4 Days Post Anthesis	140.99
S0818	Sun1642 (sun-D)	SA4 Pericarp, 7 Days Post Anthesis	165.02
S0819	Sun1642 (sun-D)	SA4 Septum, 7 Days Post Anthesis	171.24
S0820	Sun1642 (sun-D)	SA4 Seeds, 7 Days Post Anthesis	164.84
S0821	Sun1642 (sun-D)	SA4 Pericarp, 10 Days Post Anthesis	185.34
S0822	Sun1642 (sun-D)	SA4 Septum, 10 Days Post Anthesis	173.48
S0823	Sun1642 (sun-D)	SA4 Seeds, 10 Days Post Anthesis	185.8

Experiment: Transcriptome profiling of ripe fruits of S. lycopersicoides ILs

sample ID	genotype	description	RPM
S0824	VF36	fruit, red ripe, VF36	66.52
S0825	LA3882	fruit, red ripe, S. lycopersicoides IL LA3882	94.34
S0826	LA3886	fruit, red ripe, S. lycopersicoides IL LA3886	67.47
S0827	LA3892	fruit, red ripe, S. lycopersicoides IL LA3892	57.3
S0828	LA4230	fruit, red ripe, S. lycopersicoides IL LA4230	69.96
S0829	LA4231	fruit, red ripe, S. lycopersicoides IL LA4231	63.87
S0830	LA4232	fruit, red ripe, S. lycopersicoides IL LA4232	64.85
S0831	LA4233	fruit, red ripe, S. lycopersicoides IL LA4233	61.88
S0832	LA4234A	fruit, red ripe, S. lycopersicoides IL LA4234A	60.64
S0833	LA4234B	fruit, red ripe, S. lycopersicoides IL LA4234B	56.22
S0834	LA4235	fruit, red ripe, S. lycopersicoides IL LA4235	69.97
S0835	LA4236A	fruit, red ripe, S. lycopersicoides IL LA4236A	69.55
S0836	LA4237	fruit, red ripe, S. lycopersicoides IL LA4237	66.04
S0837	LA4238	fruit, red ripe, S. lycopersicoides IL LA4238	87.84
S0838	LA4239	fruit, red ripe, S. lycopersicoides IL LA4239	90.23
S0839	LA4241A	fruit, red ripe, S. lycopersicoides IL LA4241A	92.69
S0840	LA4241B	fruit, red ripe, S. lycopersicoides IL LA4241B	73.27
S0841	LA4242A	fruit, red ripe, S. lycopersicoides IL LA4242A	63.4
S0842	LA4242B	fruit, red ripe, S. lycopersicoides IL LA4242B	79.98
S0843	LA4242C	fruit, red ripe, S. lycopersicoides IL LA4242C	66.88
S0844	LA4243	fruit, red ripe, S. lycopersicoides IL LA4243	81.07
S0845	LA4244	fruit, red ripe, S. lycopersicoides IL LA4244	65.03
S0846	LA4245	fruit, red ripe, S. lycopersicoides IL LA4245	61.92
S0847	LA4247	fruit, red ripe, S. lycopersicoides IL LA4247	74.11
S0848	LA4248	fruit, red ripe, S. lycopersicoides IL LA4248	61.73
S0849	LA4249A	fruit, red ripe, S. lycopersicoides IL LA4249A	71.81
S0850	LA4249B	fruit, red ripe, S. lycopersicoides IL LA4249B	63.37
S0851	LA4250A	fruit, red ripe, S. lycopersicoides IL LA4250A	87.61
S0852	LA4250B	fruit, red ripe, S. lycopersicoides IL LA4250B	62.96
S0853	LA4250C	fruit, red ripe, S. lycopersicoides IL LA4250C	69.58
S0854	LA4251	fruit, red ripe, S. lycopersicoides IL LA4251	59.49
S0855	LA4252A	fruit, red ripe, S. lycopersicoides IL LA4252A	66.94
S0856	LA4252B	fruit, red ripe, S. lycopersicoides IL LA4252B	69.35
S0857	LA4252C	fruit, red ripe, S. lycopersicoides IL LA4252C	54.42
S0858	LA4252E	fruit, red ripe, S. lycopersicoides IL LA4252E	66.17
S0859	LA4252F	fruit, red ripe, S. lycopersicoides IL LA4252F	60.29
S0860	LA4253	fruit, red ripe, S. lycopersicoides IL LA4253	70.97
S0861	LA4254	fruit, red ripe, S. lycopersicoides IL LA4254	62.51
S0862	LA4255	fruit, red ripe, S. lycopersicoides IL LA4255	72.5
S0863	LA4256	fruit, red ripe, S. lycopersicoides IL LA4256	70.61
S0864	LA4257	fruit, red ripe, S. lycopersicoides IL LA4257	75.2
S0865	LA4258	fruit, red ripe, S. lycopersicoides IL LA4258	58.05
S0866	LA4260	fruit, red ripe, S. lycopersicoides IL LA4260	68.44
S0867	LA4262A	fruit, red ripe, S. lycopersicoides IL LA4262A	71.08
S0868	LA4262B	fruit, red ripe, S. lycopersicoides IL LA4262B	52.26
S0869	LA4263A	fruit, red ripe, S. lycopersicoides IL LA4263A	85.39
S0870	LA4263B	fruit, red ripe, S. lycopersicoides IL LA4263B	74.21
S0871	LA4263C	fruit, red ripe, S. lycopersicoides IL LA4263C	65.92
S0872	LA4263D	fruit, red ripe, S. lycopersicoides IL LA4263D	45.07
S0873	LA4264A	fruit, red ripe, S. lycopersicoides IL LA4264A	75.18
S0874	LA4264B	fruit, red ripe, S. lycopersicoides IL LA4264B	77.78
S0875	LA4266A	fruit, red ripe, S. lycopersicoides IL LA4266A	55.69
S0876	LA4266B	fruit, red ripe, S. lycopersicoides IL LA4266B	70.46
S0877	LA4268	fruit, red ripe, S. lycopersicoides IL LA4268	62.79
S0878	LA4269	fruit, red ripe, S. lycopersicoides IL LA4269	59.99
S0879	LA4270A	fruit, red ripe, S. lycopersicoides IL LA4270A	70.17
S0880	LA4270B	fruit, red ripe, S. lycopersicoides IL LA4270B	62.27
S0881	LA4272	fruit, red ripe, S. lycopersicoides IL LA4272	64.3
S0882	LA4273	fruit, red ripe, S. lycopersicoides IL LA4273	55.32
S0883	LA4274	fruit, red ripe, S. lycopersicoides IL LA4274	61.89
S0884	LA4275	fruit, red ripe, S. lycopersicoides IL LA4275	58.48
S0885	LA4276A	fruit, red ripe, S. lycopersicoides IL LA4276A	49.77
S0886	LA4276B	fruit, red ripe, S. lycopersicoides IL LA4276B	62.72
S0887	LA4276C	fruit, red ripe, S. lycopersicoides IL LA4276C	67.28
S0888	LA4276D	fruit, red ripe, S. lycopersicoides IL LA4276D	52.84
S0889	LA4277	fruit, red ripe, S. lycopersicoides IL LA4277	63.81
S0890	LA4277B	fruit, red ripe, S. lycopersicoides IL LA4277B	62.67
S0891	LA4277C	fruit, red ripe, S. lycopersicoides IL LA4277C	70.35
S0892	LA4278A	fruit, red ripe, S. lycopersicoides IL LA4278A	65.15
S0893	LA4278B	fruit, red ripe, S. lycopersicoides IL LA4278B	60.85
S0894	LA4279	fruit, red ripe, S. lycopersicoides IL LA4279	43.78
S0895	LA4280	fruit, red ripe, S. lycopersicoides IL LA4280	60.27
S0896	LA4281A	fruit, red ripe, S. lycopersicoides IL LA4281A	64.84
S0897	LA4281B	fruit, red ripe, S. lycopersicoides IL LA4281B	71.67
S0898	LA4281C	fruit, red ripe, S. lycopersicoides IL LA4281C	71.81
S0899	LA4281D	fruit, red ripe, S. lycopersicoides IL LA4281D	54.92
S0900	LA4281E	fruit, red ripe, S. lycopersicoides IL LA4281E	62.23
S0901	LA4282A	fruit, red ripe, S. lycopersicoides IL LA4282A	56.12
S0902	LA4282B	fruit, red ripe, S. lycopersicoides IL LA4282B	63.86
S0903	LA4282C	fruit, red ripe, S. lycopersicoides IL LA4282C	57.88
S0904	LA4284	fruit, red ripe, S. lycopersicoides IL LA4284	44.13
S0905	LA4294A	fruit, red ripe, S. lycopersicoides IL LA4294A	83.86
S0906	LA4294B	fruit, red ripe, S. lycopersicoides IL LA4294B	70.77
S0907	LA4295	fruit, red ripe, S. lycopersicoides IL LA4295	58.12
S0908	LA4296	fruit, red ripe, S. lycopersicoides IL LA4296	76.76
S0909	LA4297	fruit, red ripe, S. lycopersicoides IL LA4297	55.88
S0910	LA4298	fruit, red ripe, S. lycopersicoides IL LA4298	76
S0911	LA4299	fruit, red ripe, S. lycopersicoides IL LA4299	57.49
S0912	LA4300A	fruit, red ripe, S. lycopersicoides IL LA4300A	53.51
S0913	LA4300B	fruit, red ripe, S. lycopersicoides IL LA4300B	40.22
S0914	LA4301A	fruit, red ripe, S. lycopersicoides IL LA4301A	38.83
S0915	LA4303	fruit, red ripe, S. lycopersicoides IL LA4303	39.52
S0916	LA4305	fruit, red ripe, S. lycopersicoides IL LA4305	82.08
S0917	LA4306A	fruit, red ripe, S. lycopersicoides IL LA4306A	33.84
S0918	LA4306B	fruit, red ripe, S. lycopersicoides IL LA4306B	31.18
S0919	LA4307	fruit, red ripe, S. lycopersicoides IL LA4307	38.06
S0920	LA4308	fruit, red ripe, S. lycopersicoides IL LA4308	70.5
S0921	LA4308A	fruit, red ripe, S. lycopersicoides IL LA4308A	62.75
S0922	LA4309	fruit, red ripe, S. lycopersicoides IL LA4309	38.95
S0923	LA4310	fruit, red ripe, S. lycopersicoides IL LA4310	23.06
S0924	LA4311	fruit, red ripe, S. lycopersicoides IL LA4311	68.49
S0925	LA4312A	fruit, red ripe, S. lycopersicoides IL LA4312A	77.47
S0926	LA4312B	fruit, red ripe, S. lycopersicoides IL LA4312B	53.14
S0927	LA4313A	fruit, red ripe, S. lycopersicoides IL LA4313A	44.17
S0928	LA4313B	fruit, red ripe, S. lycopersicoides IL LA4313B	39.71

Experiment: Transcriptome profiling of ripe fruits of S. pimpinellifolium RILs

sample ID	genotype	description	RPM
S0953	LA2093	fruit, red ripe, S. pimpinellifolium LA2093	87.15
S0954	NCEBR1	fruit, red ripe, S. lycopersicum NCEBR1	56.81
S0955	RIL-1	fruit, red ripe, S. pimpinellifolium RIL-1	58.18
S0956	RIL-3	fruit, red ripe, S. pimpinellifolium RIL-3	65.42
S0957	RIL-4	fruit, red ripe, S. pimpinellifolium RIL-4	50.63
S0958	RIL-5	fruit, red ripe, S. pimpinellifolium RIL-5	42.84
S0959	RIL-6	fruit, red ripe, S. pimpinellifolium RIL-6	54.42
S0960	RIL-7	fruit, red ripe, S. pimpinellifolium RIL-7	66.9
S0961	RIL-11	fruit, red ripe, S. pimpinellifolium RIL-11	81.65
S0962	RIL-12	fruit, red ripe, S. pimpinellifolium RIL-12	62.63
S0963	RIL-13	fruit, red ripe, S. pimpinellifolium RIL-13	68.09
S0964	RIL-14	fruit, red ripe, S. pimpinellifolium RIL-14	74.56
S0965	RIL-16	fruit, red ripe, S. pimpinellifolium RIL-16	61.08
S0966	RIL-18	fruit, red ripe, S. pimpinellifolium RIL-18	54.61
S0967	RIL-19	fruit, red ripe, S. pimpinellifolium RIL-19	52.21
S0968	RIL-20	fruit, red ripe, S. pimpinellifolium RIL-20	96.01
S0969	RIL-21	fruit, red ripe, S. pimpinellifolium RIL-21	77
S0970	RIL-22	fruit, red ripe, S. pimpinellifolium RIL-22	65.64
S0971	RIL-23	fruit, red ripe, S. pimpinellifolium RIL-23	50.95
S0972	RIL-24	fruit, red ripe, S. pimpinellifolium RIL-24	55.37
S0973	RIL-25	fruit, red ripe, S. pimpinellifolium RIL-25	69.71
S0974	RIL-26	fruit, red ripe, S. pimpinellifolium RIL-26	61.16
S0975	RIL-27	fruit, red ripe, S. pimpinellifolium RIL-27	61.91
S0976	RIL-28	fruit, red ripe, S. pimpinellifolium RIL-28	66.75
S0977	RIL-30	fruit, red ripe, S. pimpinellifolium RIL-30	70.01
S0978	RIL-31	fruit, red ripe, S. pimpinellifolium RIL-31	61.79
S0979	RIL-32	fruit, red ripe, S. pimpinellifolium RIL-32	54.06
S0980	RIL-33	fruit, red ripe, S. pimpinellifolium RIL-33	49.57
S0981	RIL-34	fruit, red ripe, S. pimpinellifolium RIL-34	55.92
S0982	RIL-35	fruit, red ripe, S. pimpinellifolium RIL-35	64.96
S0983	RIL-37	fruit, red ripe, S. pimpinellifolium RIL-37	63.29
S0984	RIL-38	fruit, red ripe, S. pimpinellifolium RIL-38	51.13
S0985	RIL-39	fruit, red ripe, S. pimpinellifolium RIL-39	44.93
S0986	RIL-41	fruit, red ripe, S. pimpinellifolium RIL-41	67.59
S0987	RIL-43	fruit, red ripe, S. pimpinellifolium RIL-43	66.28
S0988	RIL-45	fruit, red ripe, S. pimpinellifolium RIL-45	47.94
S0989	RIL-47	fruit, red ripe, S. pimpinellifolium RIL-47	64.71
S0990	RIL-48	fruit, red ripe, S. pimpinellifolium RIL-48	40.85
S0991	RIL-49	fruit, red ripe, S. pimpinellifolium RIL-49	65.71
S0992	RIL-50	fruit, red ripe, S. pimpinellifolium RIL-50	67.38
S0993	RIL-52	fruit, red ripe, S. pimpinellifolium RIL-52	66.62
S0994	RIL-53	fruit, red ripe, S. pimpinellifolium RIL-53	77.83
S0995	RIL-54	fruit, red ripe, S. pimpinellifolium RIL-54	60.73
S0996	RIL-55	fruit, red ripe, S. pimpinellifolium RIL-55	66.39
S0997	RIL-56	fruit, red ripe, S. pimpinellifolium RIL-56	61.59
S0998	RIL-57	fruit, red ripe, S. pimpinellifolium RIL-57	55.26
S0999	RIL-58	fruit, red ripe, S. pimpinellifolium RIL-58	51.87
S1000	RIL-62	fruit, red ripe, S. pimpinellifolium RIL-62	84.83
S1001	RIL-63	fruit, red ripe, S. pimpinellifolium RIL-63	49.86
S1002	RIL-65	fruit, red ripe, S. pimpinellifolium RIL-65	53.59
S1003	RIL-66	fruit, red ripe, S. pimpinellifolium RIL-66	52.81
S1004	RIL-67	fruit, red ripe, S. pimpinellifolium RIL-67	75.01
S1005	RIL-68	fruit, red ripe, S. pimpinellifolium RIL-68	66.84
S1006	RIL-69	fruit, red ripe, S. pimpinellifolium RIL-69	49.4
S1007	RIL-71	fruit, red ripe, S. pimpinellifolium RIL-71	68.17
S1008	RIL-72	fruit, red ripe, S. pimpinellifolium RIL-72	54.59
S1009	RIL-73	fruit, red ripe, S. pimpinellifolium RIL-73	80.67
S1010	RIL-75	fruit, red ripe, S. pimpinellifolium RIL-75	87.68
S1011	RIL-76	fruit, red ripe, S. pimpinellifolium RIL-76	77.41
S1012	RIL-77	fruit, red ripe, S. pimpinellifolium RIL-77	53.89
S1013	RIL-78	fruit, red ripe, S. pimpinellifolium RIL-78	67.27
S1014	RIL-79	fruit, red ripe, S. pimpinellifolium RIL-79	86.7
S1015	RIL-80	fruit, red ripe, S. pimpinellifolium RIL-80	62.46
S1016	RIL-81	fruit, red ripe, S. pimpinellifolium RIL-81	77.4
S1017	RIL-84	fruit, red ripe, S. pimpinellifolium RIL-84	44.09
S1018	RIL-85	fruit, red ripe, S. pimpinellifolium RIL-85	69.37
S1019	RIL-88	fruit, red ripe, S. pimpinellifolium RIL-88	64.65
S1020	RIL-90	fruit, red ripe, S. pimpinellifolium RIL-90	61.13
S1021	RIL-91	fruit, red ripe, S. pimpinellifolium RIL-91	49.96
S1022	RIL-95	fruit, red ripe, S. pimpinellifolium RIL-95	61.42
S1023	RIL-96	fruit, red ripe, S. pimpinellifolium RIL-96	56.49
S1024	RIL-97	fruit, red ripe, S. pimpinellifolium RIL-97	59.63
S1025	RIL-98	fruit, red ripe, S. pimpinellifolium RIL-98	76.3
S1026	RIL-99	fruit, red ripe, S. pimpinellifolium RIL-99	58.87
S1027	RIL-100	fruit, red ripe, S. pimpinellifolium RIL-100	65.64
S1028	RIL-101	fruit, red ripe, S. pimpinellifolium RIL-101	67.28
S1029	RIL-102	fruit, red ripe, S. pimpinellifolium RIL-102	72.62
S1030	RIL-103	fruit, red ripe, S. pimpinellifolium RIL-103	72.45
S1031	RIL-105	fruit, red ripe, S. pimpinellifolium RIL-105	59.46
S1032	RIL-107	fruit, red ripe, S. pimpinellifolium RIL-107	65.92
S1033	RIL-108	fruit, red ripe, S. pimpinellifolium RIL-108	52.71
S1034	RIL-109	fruit, red ripe, S. pimpinellifolium RIL-109	56.92
S1035	RIL-111	fruit, red ripe, S. pimpinellifolium RIL-111	54.07
S1036	RIL-112	fruit, red ripe, S. pimpinellifolium RIL-112	62.76
S1037	RIL-113	fruit, red ripe, S. pimpinellifolium RIL-113	56.13
S1038	RIL-114	fruit, red ripe, S. pimpinellifolium RIL-114	71.26
S1039	RIL-115	fruit, red ripe, S. pimpinellifolium RIL-115	54.87
S1040	RIL-116	fruit, red ripe, S. pimpinellifolium RIL-116	72.22
S1041	RIL-117	fruit, red ripe, S. pimpinellifolium RIL-117	73.28
S1042	RIL-118	fruit, red ripe, S. pimpinellifolium RIL-118	65.69
S1043	RIL-120	fruit, red ripe, S. pimpinellifolium RIL-120	77.55
S1044	RIL-121	fruit, red ripe, S. pimpinellifolium RIL-121	70.49
S1045	RIL-122	fruit, red ripe, S. pimpinellifolium RIL-122	68.6
S1046	RIL-123	fruit, red ripe, S. pimpinellifolium RIL-123	61.49
S1047	RIL-124	fruit, red ripe, S. pimpinellifolium RIL-124	46.73
S1048	RIL-125	fruit, red ripe, S. pimpinellifolium RIL-125	59.08
S1049	RIL-126	fruit, red ripe, S. pimpinellifolium RIL-126	49.62
S1050	RIL-128	fruit, red ripe, S. pimpinellifolium RIL-128	62.17
S1051	RIL-129	fruit, red ripe, S. pimpinellifolium RIL-129	66.84
S1052	RIL-130	fruit, red ripe, S. pimpinellifolium RIL-130	58.09
S1053	RIL-131	fruit, red ripe, S. pimpinellifolium RIL-131	52.95
S1054	RIL-132	fruit, red ripe, S. pimpinellifolium RIL-132	64.64
S1055	RIL-133	fruit, red ripe, S. pimpinellifolium RIL-133	62.88
S1056	RIL-134	fruit, red ripe, S. pimpinellifolium RIL-134	53.3
S1057	RIL-135	fruit, red ripe, S. pimpinellifolium RIL-135	51.76
S1058	RIL-137	fruit, red ripe, S. pimpinellifolium RIL-137	84.38
S1059	RIL-139	fruit, red ripe, S. pimpinellifolium RIL-139	90.63
S1060	RIL-140	fruit, red ripe, S. pimpinellifolium RIL-140	69.51
S1061	RIL-142	fruit, red ripe, S. pimpinellifolium RIL-142	79.79
S1062	RIL-143	fruit, red ripe, S. pimpinellifolium RIL-143	54.35
S1063	RIL-144	fruit, red ripe, S. pimpinellifolium RIL-144	70.61
S1064	RIL-145	fruit, red ripe, S. pimpinellifolium RIL-145	69.76
S1065	RIL-146	fruit, red ripe, S. pimpinellifolium RIL-146	49.18
S1066	RIL-147	fruit, red ripe, S. pimpinellifolium RIL-147	64.64
S1067	RIL-148	fruit, red ripe, S. pimpinellifolium RIL-148	55.18
S1068	RIL-149	fruit, red ripe, S. pimpinellifolium RIL-149	59.58
S1069	RIL-150	fruit, red ripe, S. pimpinellifolium RIL-150	68.8
S1070	RIL-151	fruit, red ripe, S. pimpinellifolium RIL-151	71.22
S1071	RIL-152	fruit, red ripe, S. pimpinellifolium RIL-152	68.86
S1072	RIL-153	fruit, red ripe, S. pimpinellifolium RIL-153	107.82
S1073	RIL-154	fruit, red ripe, S. pimpinellifolium RIL-154	67.1
S1074	RIL-155	fruit, red ripe, S. pimpinellifolium RIL-155	65.12
S1075	RIL-156	fruit, red ripe, S. pimpinellifolium RIL-156	64.39
S1076	RIL-159	fruit, red ripe, S. pimpinellifolium RIL-159	67.4
S1077	RIL-160	fruit, red ripe, S. pimpinellifolium RIL-160	60.64
S1078	RIL-161	fruit, red ripe, S. pimpinellifolium RIL-161	94.16
S1079	RIL-162	fruit, red ripe, S. pimpinellifolium RIL-162	84.42
S1080	RIL-164	fruit, red ripe, S. pimpinellifolium RIL-164	60.88
S1081	RIL-165	fruit, red ripe, S. pimpinellifolium RIL-165	68.7
S1082	RIL-167	fruit, red ripe, S. pimpinellifolium RIL-167	76.34
S1083	RIL-168	fruit, red ripe, S. pimpinellifolium RIL-168	93.45
S1084	RIL-169	fruit, red ripe, S. pimpinellifolium RIL-169	54.01
S1085	RIL-171	fruit, red ripe, S. pimpinellifolium RIL-171	60.67
S1086	RIL-172	fruit, red ripe, S. pimpinellifolium RIL-172	61.57

Experiment: Transcriptome profiling of fruit of cultivated and wild tomatoes

sample ID	genotype	description	RPM
S1107	LA0816 (VF-145)	LA0816 immature green fruit	57.61
S1108	LA0816 (VF-145)	LA0816 mature green fruit	69.28
S1109	LA0816 (VF-145)	LA0816 breaker fruit	59.86
S1110	LA0816 (VF-145)	LA0816 ripe fruit	66.22
S1111	LA1563	LA1563 immature green fruit	61.12
S1112	LA1563	LA1563 mature green fruit	58.54
S1113	LA1563	LA1563 breaker fruit	63.58
S1114	LA1563	LA1563 ripe fruit	79.52
S1115	BD-MP	BD-MP immature green fruit	55.99
S1116	BD-MP	BD-MP mature green fruit	49.73
S1117	BD-MP	BD-MP breaker fruit	79.05
S1118	BD-MP	BD-MP ripe fruit	85.3
S1119	BD-MT	BD-MT immature green fruit	59.83
S1120	BD-MT	BD-MT mature green fruit	57.04
S1121	BD-MT	BD-MT breaker fruit	72.3
S1122	BD-MT	BD-MT ripe fruit	92.67
S1123	LA1306	LA1306 immature green fruit	64.11
S1124	LA1306	LA1306 mature green fruit	72.85
S1125	LA1306	LA1306 breaker fruit	70.84
S1126	LA1306	LA1306 ripe fruit	89.58
S1127	LA1412	LA1412 immature green fruit	65.71
S1128	LA1412	LA1412 mature green fruit	69.47
S1129	LA1412	LA1412 breaker fruit	92.21
S1130	LA1412	LA1412 ripe fruit	122.37
S1131	LA1586	LA1586 immature green fruit	66.69
S1132	LA1586	LA1586 mature green fruit	112.25
S1133	LA1586	LA1586 breaker fruit	155.55
S1134	LA1586	LA1586 ripe fruit	123.06
S1135	LA1589	LA1589 immature green fruit	80.27
S1136	LA1589	LA1589 mature green fruit	91.63
S1137	LA1589	LA1589 breaker fruit	151.61
S1138	LA1589	LA1589 ripe fruit	217.19
S1139	LA1028	LA1028 immature green fruit	27.81
S1141	LA1028	LA1028 breaker fruit	51.48
S1142	LA1028	LA1028 ripe fruit	49.37
S1143	LA1318	LA1318 immature green fruit	42.37
S1144	LA1318	LA1318 mature green fruit	28.36
S1145	LA1318	LA1318 breaker fruit	52.81
S1146	LA1318	LA1318 ripe fruit	56.04
S1147	BD-732	BD-732 immature green fruit	44.42
S1148	BD-732	BD-732 mature green fruit	47.18
S1149	BD-732	BD-732 breaker fruit	55.27
S1150	BD-732	BD-732 ripe fruit	53.34
S1151	LA0407	LA0407 immature green fruit	54.35
S1152	LA0407	LA0407 mature green fruit	68.52
S1153	LA0407	LA0407 breaker fruit	58.5
S1154	LA0407	LA0407 ripe fruit	67.03
S1155	LA1777	LA1777 immature green fruit	69.2
S1156	LA1777	LA1777 mature green fruit	84.14
S1157	LA1777	LA1777 breaker fruit	72.26
S1158	LA1777	LA1777 ripe fruit	65.06
S1159	LA0716	LA0716 immature green fruit	42.21
S1160	LA0716	LA0716 mature green fruit	34.87
S1161	LA0716	LA0716 breaker fruit	68.88
S1162	LA0716	LA0716 ripe fruit	70.07
S1163	PI126431	PI126431 immature green fruit	54.6
S1164	PI126431	PI126431 mature green fruit	95.06
S1165	PI126431	PI126431 breaker fruit	103.7
S1166	PI126431	PI126431 ripe fruit	119.9
S1167	PI126926	PI126926 immature green fruit	67.79
S1168	PI126926	PI126926 mature green fruit	61.19
S1169	PI126926	PI126926 breaker fruit	62.67
S1170	PI126926	PI126926 ripe fruit	80.66
S1171	LA1584	LA1584 ripe fruit	129.81
S1172	LA2173	LA2173 ripe fruit	112.59
S1173	LA1301	LA1301 ripe fruit	138.45
S1174	LA1335	LA1335 ripe fruit	109.74
S1175	LA1371	LA1371 ripe fruit	135.94
S1176	LA1521	LA1521 ripe fruit	126.81
S1177	LA1659	LA1659 ripe fruit	111.53
S1178	LA0722	LA0722 ripe fruit	146.57
S1179	LA1547	LA1547 ripe fruit	108.47
S1180	LA3123	LA3123 ripe fruit	99.27
S1181	LA2096	LA2096 ripe fruit	96.55
S1182	LA1246	LA1246 ripe fruit	107.74
S1183	LA1259	LA1259 ripe fruit	99.54
S1184	LA2093	LA2093 ripe fruit	158.39
S1185	LA0418	LA0418 ripe fruit	93.48
S1186	LA2850	LA2850 ripe fruit	132.93
S1187	LA1043	LA1043 ripe fruit	108.71
S1188	LA0438	LA0438 ripe fruit	124.51
S1189	LA0532	LA0532 ripe fruit	112.89
S1190	LA1044	LA1044 ripe fruit	83.28
S1191	LA1452	LA1452 ripe fruit	90.26
S1192	LA0528	LA0528 ripe fruit	111
S1193	LA0530	LA0530 ripe fruit	101.44
S1194	LA0480A	LA0480A ripe fruit	115.01
S1195	LA0521	LA0521 ripe fruit	113.75
S1196	LA0422	LA0422 ripe fruit	110.29
S1197	LA0529	LA0529 ripe fruit	93.82
S1198	LA1039	LA1039 ripe fruit	100.92
S1199	LA1042	LA1042 ripe fruit	113.2
S1200	LA1407	LA1407 ripe fruit	113.01
S1201	LA1035	LA1035 ripe fruit	87.38