Tomato miRNA M00006

sequenceLengthmiRNA familysRNA IDtarget
CUGGCAGAAGAGAGUGAGCA20miR156 S14727255 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)333.22
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)7610.07
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)80.93
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)10.22
S0735Solanum lycopersicumSunnyleaf , TSWV-infected1712126.28
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 408314.41
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 516391.44
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 924658.29
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 1226902.92
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 434270.99
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 274174.55
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 886583.92
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 750458.51
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 701419.63
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3112109.28
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate215992.82
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate15049.05
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate2268189.54
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate15256.61
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate210.96
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate27753.64
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1320427.02
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker1713716.31
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker257262.8
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker62341569.13
S0713Solanum lycopersicumMicroTom fruit , breaker stage20658.39
S0712Solanum lycopersicumMicroTom fruit , mature green38799.01
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter11856.84
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter9478.09
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter10961.8
S0708Solanum lycopersicumMicroTom flower, open17854.92
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming509133.63
S0373Solanum lycopersicumHeinz 1706fruit461137.98
S0372Solanum lycopersicumHeinz 1706flower378114.4
S0371Solanum lycopersicumHeinz 1706leaf2759831.4

Hits on known miRNAs

hit miRNAalignment
cme-miR156j-CTGGCAGAAGAGAGTGAGCA-
xx||x||||||||||||||||x
GTTGACAGAAGAGAGTGAGCAC
gma-miR156kCTGGCAGAAGAGAGTGAGCA-
x||x||||||||||||||||x
TTGACAGAAGAGAGTGAGCAC
gma-miR156nCTGGCAGAAGAGAGTGAGCA-
x||x||||||||||||||||x
TTGACAGAAGAGAGTGAGCAC
gma-miR156oCTGGCAGAAGAGAGTGAGCA-
x||x||||||||||||||||x
TTGACAGAAGAGAGTGAGCAC

Precursor of miRNA M00006

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch1232754563275349- CUGGCAGAAGAGAGUGAGCA
UACACAUAUAAUUAUAUAAA
CAUGUUUACAUAAUUCUUUU
GAUAUAUAUAUAUAUAAUUU
UGCGUGUGCUCACUUCUCUU
UCUGUCAA
-40.30NA structure