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Tomato miRNA M00009
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GUGACAGAAGAGAGUGAGCAC | 21 | miR156 | S19363279 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 8 | 5.7 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 8 | 5.89 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 62 | 60.49 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 5 | 4.9 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 3 | 2.12 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 50 | 54.43 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 19 | 18.15 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 62 | 179.1 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| cme-miR156j | -GTGACAGAAGAGAGTGAGCAC xx|||||||||||||||||||| GTTGACAGAAGAGAGTGAGCAC |
| gma-miR156k | GTGACAGAAGAGAGTGAGCAC x|||||||||||||||||||| TTGACAGAAGAGAGTGAGCAC |
| gma-miR156n | GTGACAGAAGAGAGTGAGCAC x|||||||||||||||||||| TTGACAGAAGAGAGTGAGCAC |
| gma-miR156o | GTGACAGAAGAGAGTGAGCAC x|||||||||||||||||||| TTGACAGAAGAGAGTGAGCAC |
Precursor of miRNA M00009
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch07 | 48503781 | 48503867 | + | GUGACAGAAGAGAGUGAGCA CACAUGGUUCUUUCAUGGAU UAUUCCCCAUGUUUAAAAGC UCUGCGUGCUCACGCUCUAU CUGUCAC | -43.50 | NA | structure |
| SL2.40ch08 | 49276199 | 49276287 | + | GUGACAGAAGAGAGUGAGCA CACAUGGUGUUUUCUAGCAU GAUGUUUUACAUGCUUGAAA CUAUGUGUGCUCACUGCUCU AUCUGUCAC | -53.50 | NA | structure |
| SL2.40ch08 | 49143140 | 49143053 | - | GUGACAGAAGAGAGUGAGCA CACAUGAUGUUUUCUCGCAU GAUGUUUACAUGCUUGAAAC UAUGCGUGCUCACUGCUCUA UCUGUCAC | -43.90 | NA | structure |
| SL2.40ch08 | 49122969 | 49122874 | - | GUGACAGAAGAGAGUGAGCA CACAUGGCGUUUUCUGGCAU GAUGUUUAUAUAUAUAUAUG CUUGAAACUAUGUGUGCUCA CUGCUCUAUCUGUCAC | -52.50 | NA | structure |
| SL2.40ch08 | 49143879 | 49143792 | - | GUGACAGAAGAGAGUGAGCA CAUAUGGUCUUUUCAAGCAU GAUGUUUACAUGCUUGAAGC UAUGCGUGCUCACUUCUCUA UCUGUCAC | -51.10 | NA | structure |
| SL2.40ch08 | 49143814 | 49143604 | - | GUGCUCACUUCUCUAUCUGU CACCCCCCAAUCCCCAACUG CUUUCUCUUUGUCUGUUUAU AUUUUUUUUUGUUUAUUUAU GAUGUUUGAUCAUAUUAAUU GGAUUAAUUCAUAAGCUUAU GCUAAGACUUUGACUUCACU UGUCUUUAUUUUUGGGUCAA GCAUUGAGUGGGAUGUAAAA CCAAAGGGAGGUGACAGAAG AGAGUGAGCAC | -67.20 | NA | structure |
