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Tomato miRNA M00011
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUGACAGAAGAUAGAGAGCACA | 22 | miR156 | S25349287 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 196 | 14.46 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 4 | 1.67 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 10 | 2.52 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 30 | 7.68 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 252 | 121.39 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 133 | 110.49 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 179 | 101.49 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 92 | 28.39 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 111 | 29.14 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 8 | 2.39 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 24 | 7.26 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 139 | 41.89 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| gma-miR156f | TTGACAGAAGATAGAGAGCACA |||||||||||x|||||||||| TTGACAGAAGAGAGAGAGCACA |
Precursor of miRNA M00011
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch02 | 29897683 | 29897767 | + | UUGACAGAAGAUAGAGAGCA CAGAUGAUAAAGUGCAUGGA AAUUGUCUGCACCUUACUCC UUUGUGCUCUUUAUUCUUCU GUCAU | -42.00 | NA | structure |
| SL2.40ch03 | 61720039 | 61720157 | + | UUGACAGAAGAUAGAGAGCA CAUAUGAUGGAAUGCUGCUG CUGCUGCUGCUAAAUCUGGA GAGUCUUAACAAUAAAAAAA AGCAUUUCACUUCAUUUGUG CUCUCUAUGCUUCCGUCAU | -47.00 | NA | structure |
