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Tomato miRNA M00012
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUGACAGAAGAUAGAGAGCACU | 22 | miR156 | S25349297 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 6 | 0.58 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 2 | 0.27 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 6 | 0.7 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 20 | 4.31 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1008 | 74.35 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 7 | 2.93 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 2 | 2.05 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 16 | 4.03 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 2 | 0.57 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 36 | 9.21 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 16 | 7.71 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 1 | 0.83 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 9 | 5.1 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 25 | 7.71 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 121 | 31.77 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 16 | 4.79 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 55 | 16.65 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 442 | 133.19 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| gma-miR156f | TTGACAGAAGATAGAGAGCACT |||||||||||x|||||||||x TTGACAGAAGAGAGAGAGCACA |
Precursor of miRNA M00012
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch06 | 39241775 | 39241676 | - | UUGACAGAAGAUAGAGAGCA CUAAUGAUGAUAUGCUAAUU UCAUUCAAUUUGGGCAGCAA AAGCAUCUCAAUUCAUUUGU GCUCUCUAUGCUUCUGUCAU | -43.44 | NA | structure |
