Tomato miRNA M00018

sequenceLengthmiRNA familysRNA IDtarget
UUUGGAUUGAAGGGAGCUCU20miR159 S26397461 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)414
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)263.45
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)8910.4
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)12426.7
S0735Solanum lycopersicumSunnyleaf , TSWV-infected302.21
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker10.42
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker5313.34
S0713Solanum lycopersicumMicroTom fruit , breaker stage71.98
S0712Solanum lycopersicumMicroTom fruit , mature green194.86
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter279134.39
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter180149.53
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter272154.22
S0708Solanum lycopersicumMicroTom flower, open329.87
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming4812.6
S0373Solanum lycopersicumHeinz 1706fruit82.39
S0372Solanum lycopersicumHeinz 1706flower41.21
S0371Solanum lycopersicumHeinz 1706leaf92.71

Hits on known miRNAs

hit miRNAalignment
ahy-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
aly-miR159a-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
aly-miR159b-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTT
ath-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
ath-miR159bTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTT
bna-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
bra-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
cme-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
csi-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
far-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
gma-miR159a-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
gma-miR159e-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
hbr-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
htu-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
hvu-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
hvu-miR159bTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
mes-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
mtr-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
nta-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
osa-miR159a.1TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
osa-miR159bTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
ptc-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
ptc-miR159bTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
ptc-miR159cTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
pvu-miR159a.1TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
rco-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
sbi-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
sly-miR159TTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
sof-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
sof-miR159bTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
sof-miR159dTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
ssp-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
tae-miR159aTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
tae-miR159bTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
vvi-miR159cTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTA
zma-miR159a-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
zma-miR159b-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
zma-miR159f-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
zma-miR159j-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG
zma-miR159k-3pTTTGGATTGAAGGGAGCTCT-
||||||||||||||||||||x
TTTGGATTGAAGGGAGCTCTG

Precursor of miRNA M00018

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch036178606661786241+ GGAGCUCCUUGAAGUCCAAC
AGAAGAUCUAACAGGUUAGA
UUGAGCUGCUGACCUAUGGA
UUCCUCAGCCCUAUCUAUUU
AUGAUUUCAAACAUAUAGAU
AGGUUUGUGGGUUUGCAUAU
GUCAGGAGCUUUAUUUUACC
CUUUGUUUGAUCAUUUUUUG
GAUUGAAGGGAGCUCU
-78.00miRNA* structure