Tomato miRNA M00020

sequenceLengthmiRNA familysRNA IDtarget
GGAGGCAGCGGUUCAUCGAUC21miR162 S17879556 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)68566.75
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)1217161.31
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)81995.68
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)61.29
S0735Solanum lycopersicumSunnyleaf , TSWV-infected695.09
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker83.35
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker102.52
S0713Solanum lycopersicumMicroTom fruit , breaker stage10.28
S0712Solanum lycopersicumMicroTom fruit , mature green143.58
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter3114.93
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter3327.41
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter1910.77
S0708Solanum lycopersicumMicroTom flower, open10532.4
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming4411.55
S0373Solanum lycopersicumHeinz 1706fruit30.9
S0372Solanum lycopersicumHeinz 1706flower72.12
S0371Solanum lycopersicumHeinz 1706leaf61.81

Hits on known miRNAs

hit miRNAalignment
aly-miR162a-5pGGAGGCAGCGGTTCATCGATC
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GGAGGCAGCGGTTCATCGATC
aly-miR162b-5pGGAGGCAGCGGTTCATCGATC
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GGAGGCAGCGGTTCATCGATC
csi-miR162-5p-GGAGGCAGCGGTTCATCGATC
x|||||||||||||||||||||
TGGAGGCAGCGGTTCATCGATC

Precursor of miRNA M00020

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch035849154558491623+ GGAGGCAGCGGUUCAUCGAU
C
UGUUCCCUGAAAAGCGAUA
AAUACAGCAACAGGAAGCGA
UCGAUAAACCUCUGCAUCC
-32.90NA structure
SL2.40ch063946312039463213+ GGAGGCAGCGGUUCAUCGAU
C
CGUUCCCUGGAAGCUGAAU
AUAUAUAUACGCAAAAAUAC
AGCAAAAGGAAUCGGUCGAU
AAACCUCUGCAUCC
-32.85NA structure