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Tomato miRNA M00021
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UCGAUAAACCUCUGCAUCCAG | 21 | miR162 | S22384871 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 6260 | 610 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 2034 | 269.6 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 4429 | 517.41 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3353 | 722.04 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 8013 | 591.04 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 71 | 29.69 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 28 | 28.63 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 405 | 101.94 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 103 | 29.19 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 475 | 121.52 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 132 | 63.58 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 39 | 32.4 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 102 | 57.83 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 227 | 70.04 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 253 | 66.42 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 2230 | 667.47 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1654 | 500.57 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 4164 | 1254.79 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aau-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| aly-miR162a-3p | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| aly-miR162b-3p | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| ath-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| ath-miR162b | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| cme-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| cpa-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| csi-miR162-3p | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| ghr-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| gma-miR162b | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| gma-miR162c | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| hpe-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| htu-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| mdm-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| mdm-miR162b | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| mtr-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| nta-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| nta-miR162b | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| osa-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| pde-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| ptc-miR162a | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| ptc-miR162b | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| ptc-miR162c | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| rco-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| sbi-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| sly-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| tcc-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| vun-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
| vvi-miR162 | TCGATAAACCTCTGCATCCAG ||||||||||||||||||||| TCGATAAACCTCTGCATCCAG |
Precursor of miRNA M00021
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 58491543 | 58491625 | + | CUGGAGGCAGCGGUUCAUCG AUCUGUUCCCUGAAAAGCGA UAAAUACAGCAACAGGAAGC GAUCGAUAAACCUCUGCAUC CAG | -37.10 | miRNA* | structure |
| SL2.40ch06 | 39463118 | 39463215 | + | CUGGAGGCAGCGGUUCAUCG AUCCGUUCCCUGGAAGCUGA AUAUAUAUAUACGCAAAAAU ACAGCAAAAGGAAUCGGUCG AUAAACCUCUGCAUCCAG | -37.05 | miRNA* | structure |
