Tomato miRNA M00021

sequenceLengthmiRNA familysRNA IDtarget
UCGAUAAACCUCUGCAUCCAG21miR162 S22384871 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)6260610
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)2034269.6
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)4429517.41
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)3353722.04
S0735Solanum lycopersicumSunnyleaf , TSWV-infected8013591.04
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker7129.69
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker2828.63
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker405101.94
S0713Solanum lycopersicumMicroTom fruit , breaker stage10329.19
S0712Solanum lycopersicumMicroTom fruit , mature green475121.52
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter13263.58
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter3932.4
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter10257.83
S0708Solanum lycopersicumMicroTom flower, open22770.04
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming25366.42
S0373Solanum lycopersicumHeinz 1706fruit2230667.47
S0372Solanum lycopersicumHeinz 1706flower1654500.57
S0371Solanum lycopersicumHeinz 1706leaf41641254.79

Hits on known miRNAs

hit miRNAalignment
aau-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
aly-miR162a-3pTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
aly-miR162b-3pTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
ath-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
ath-miR162bTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
cme-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
cpa-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
csi-miR162-3pTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
ghr-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
gma-miR162bTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
gma-miR162cTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
hpe-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
htu-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
mdm-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
mdm-miR162bTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
mtr-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
nta-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
nta-miR162bTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
osa-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
pde-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
ptc-miR162aTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
ptc-miR162bTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
ptc-miR162cTCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
rco-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
sbi-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
sly-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
tcc-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
vun-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG
vvi-miR162TCGATAAACCTCTGCATCCAG
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TCGATAAACCTCTGCATCCAG

Precursor of miRNA M00021

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch035849154358491625+ CUGGAGGCAGCGGUUCAUCG
AUCUGUUCCCUGAAAAGCGA
UAAAUACAGCAACAGGAAGC
GAUCGAUAAACCUCUGCAUC
CAG
-37.10miRNA* structure
SL2.40ch063946311839463215+ CUGGAGGCAGCGGUUCAUCG
AUCCGUUCCCUGGAAGCUGA
AUAUAUAUAUACGCAAAAAU
ACAGCAAAAGGAAUCGGUCG
AUAAACCUCUGCAUCCAG
-37.05miRNA* structure