Tomato miRNA M00027

sequenceLengthmiRNA familysRNA IDtarget
GGACCAGGCUUCAUUCCUC19miR166 S17769341 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)141.36
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)70.93
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)80.93
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)255.38
S0735Solanum lycopersicumSunnyleaf , TSWV-infected916.71
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker41.67
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker11.02
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker215.29
S0713Solanum lycopersicumMicroTom fruit , breaker stage51.42
S0712Solanum lycopersicumMicroTom fruit , mature green112.81
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter41.93
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter32.49
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter31.7
S0708Solanum lycopersicumMicroTom flower, open72.16
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming5714.96
S0373Solanum lycopersicumHeinz 1706fruit247.18
S0372Solanum lycopersicumHeinz 1706flower444134.37
S0371Solanum lycopersicumHeinz 1706leaf11935.86

Hits on known miRNAs

hit miRNAalignment
aqc-miR166a--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
aqc-miR166d--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
cme-miR166e--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
dpr-miR166a--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
mtr-miR166c--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
mtr-miR166f--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
osa-miR166g-3p--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
osa-miR166h-3p--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
pab-miR166a--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
sbi-miR166f--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
ssl-miR166a--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
tcc-miR166c--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
zma-miR166l-3p--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC
zma-miR166m-3p--GGACCAGGCTTCATTCCTC
xx|||||||||||||||||||
TCGGACCAGGCTTCATTCCTC

Precursor of miRNA M00027

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch018438205484381908- GGGGGAUGUUGUCUGGCUCG
ACACAAUUACUCUAUUGUAU
GUAUUUAGUUAUUCGUUAUC
AAGAUUGAUGUCGAUAACGA
AUAAAUUAAACACAUAUAUA
CAAGAUGUAAAAAGGGAGUA
AAGGCGUCGGACCAGGCUUC
AUUCCUC
-60.20NA structure