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Tomato miRNA M00027
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GGACCAGGCUUCAUUCCUC | 19 | miR166 | S17769341 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 14 | 1.36 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 7 | 0.93 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 8 | 0.93 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 25 | 5.38 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 91 | 6.71 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 4 | 1.67 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 1 | 1.02 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 21 | 5.29 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 5 | 1.42 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 11 | 2.81 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 4 | 1.93 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 3 | 2.49 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 3 | 1.7 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 7 | 2.16 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 57 | 14.96 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 24 | 7.18 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 444 | 134.37 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 119 | 35.86 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aqc-miR166a | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| aqc-miR166d | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| cme-miR166e | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| dpr-miR166a | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| mtr-miR166c | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| mtr-miR166f | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| osa-miR166g-3p | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| osa-miR166h-3p | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| pab-miR166a | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| sbi-miR166f | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| ssl-miR166a | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| tcc-miR166c | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| zma-miR166l-3p | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| zma-miR166m-3p | --GGACCAGGCTTCATTCCTC xx||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
Precursor of miRNA M00027
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 84382054 | 84381908 | - | GGGGGAUGUUGUCUGGCUCG ACACAAUUACUCUAUUGUAU GUAUUUAGUUAUUCGUUAUC AAGAUUGAUGUCGAUAACGA AUAAAUUAAACACAUAUAUA CAAGAUGUAAAAAGGGAGUA AAGGCGUCGGACCAGGCUUC AUUCCUC | -60.20 | NA | structure |
