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Tomato miRNA M00034
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUCGGACCAGGCUUCAUUCCCC | 22 | miR166 | S25121239 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1 | 0.1 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 8 | 0.93 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 74 | 15.94 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 204 | 15.05 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 17 | 13.1 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 23 | 17.45 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 13 | 9.26 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 6 | 4.42 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 15 | 9.37 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 18 | 11.47 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 19 | 12.52 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 13 | 7.95 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 12 | 7.18 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 27 | 26.34 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 95 | 55.46 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 37 | 36.29 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 107 | 75.67 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 60 | 65.32 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 80 | 76.44 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 52 | 150.21 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 9 | 6.27 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 43 | 57.38 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 7 | 2.93 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 4 | 4.09 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 35 | 8.81 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 14 | 3.97 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 60 | 15.35 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 9 | 4.34 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 7 | 5.82 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 3 | 1.7 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 155 | 47.82 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 30 | 7.88 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 48 | 14.37 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 104 | 31.47 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 114 | 34.35 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR166a-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aly-miR166b-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aly-miR166c-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aly-miR166d-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aly-miR166e-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aly-miR166f-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aly-miR166g-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aqc-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| aqc-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ath-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ath-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ath-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ath-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ath-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ath-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ath-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bdi-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bdi-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bdi-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bdi-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bna-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bna-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bna-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bna-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| bna-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| cme-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| cme-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| cme-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| cme-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| cme-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| cme-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| cme-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| csi-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| csi-miR166e-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| dpr-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ghr-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166a-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166c-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166i-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166m | TTCGGACCAGGCTTCATTCCCC xx|||||||||||||||||||| --CGGACCAGGCTTCATTCCCC |
| gma-miR166n | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166o | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| gma-miR166p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| gma-miR166q | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| gma-miR166r | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| gma-miR166s | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| gma-miR166t | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| hpa-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| hpe-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| hvu-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| hvu-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| hvu-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mdm-miR166i | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mes-miR166 | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mtr-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mtr-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mtr-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| mtr-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| nta-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| osa-miR166a-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| osa-miR166b-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| osa-miR166c-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| osa-miR166d-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| osa-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| osa-miR166n-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ppt-miR166i | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| pta-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| pta-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166i | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166j | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166k | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166l | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ptc-miR166m | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| pvu-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| rco-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| rco-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| rco-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| rco-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| rco-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| sbi-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| sbi-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| sbi-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| sbi-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| sbi-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| sbi-miR166i | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| sbi-miR166j | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| sly-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| sly-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| smo-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| smo-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| smo-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| ssl-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| tcc-miR166a | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| tcc-miR166b | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| tcc-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| vvi-miR166c | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| vvi-miR166d | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| vvi-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| vvi-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| vvi-miR166g | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| vvi-miR166h | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| zma-miR166a-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||| -TCGGACCAGGCTTCATTCCCC |
| zma-miR166b-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| zma-miR166c-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| zma-miR166d-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| zma-miR166e | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| zma-miR166f | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| zma-miR166g-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| zma-miR166h-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
| zma-miR166i-3p | TTCGGACCAGGCTTCATTCCCC x||||||||||||||||||||x -TCGGACCAGGCTTCATTCCC- |
Precursor of miRNA M00034
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch06 | 33130286 | 33130383 | + | GGGGAAUGUUGUUUGGUUCG AAAUCAUUCAAACAAAUUAA AAUUCAUGCAUCUCGAUGAU CGAUGAAUUGAAUAAUUUCG GACCAGGCUUCAUUCCCC | -41.10 | NA | structure |
| SL2.40ch09 | 64446824 | 64446634 | - | GGAGAAUGUUGUCUGGUUCG AAAUCUUUCUAUAGAAAAAU CAGUGGUGGAUUCAGUUAUG AGUUUCAAGAUCGUUAAAUC UUAUAUAUGUACAAAAAUAA GUACAAUAUAUAUUUUUAGA CCCUAAAAUGUCGAAUAUAU AUUCUGAAUUCGUCAAUUUA UUGAGUGAUUUCGGACCAGG CUUCAUUCCCC | -58.80 | NA | structure |
| SL2.40ch06 | 2516389 | 2516289 | - | GGAGAAUGUCGUCUGGUUCG AGAUCUUUCAUAAGAAAGGU AAAUGAAUGACAAGUUUUCA UAUAUGUAUCGUGAAUGAUU UCGGACCAGGCUUCAUUCCC C | -42.10 | NA | structure |
