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Tomato miRNA M00037
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGAAGCUGCCAGCAUGAUCUA | 21 | miR167 | S23003515 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 76 | 7.41 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 25 | 3.31 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 741 | 86.57 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 333 | 71.71 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 80413 | 5931.25 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 3087 | 2378.89 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 2307 | 1750.1 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 2005 | 1428.44 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 1207 | 888.93 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 2235 | 1395.55 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 1311 | 835.16 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 1207 | 795.47 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 1297 | 792.92 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 1532 | 917.08 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 4266 | 4162.34 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 5921 | 3456.52 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 4631 | 4542.71 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 4535 | 3207.3 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 2863 | 3116.67 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 3957 | 3780.74 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 1029 | 2972.5 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 2106 | 1467.13 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 1089 | 1453.2 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 20 | 8.36 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 9 | 9.2 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 101 | 25.42 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 7 | 1.98 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 323 | 82.64 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 133 | 64.07 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 34 | 28.25 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 166 | 94.12 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 2971 | 916.68 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 2518 | 661.04 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 85 | 25.44 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 8042 | 2433.84 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 4838 | 1457.89 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR167a-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| aly-miR167b-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ath-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ath-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| bdi-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| bdi-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| bna-miR167a | TGAAGCTGCCAGCATGATCTA- |||||||||||||||||||||x TGAAGCTGCCAGCATGATCTAA |
| bna-miR167b | TGAAGCTGCCAGCATGATCTA- |||||||||||||||||||||x TGAAGCTGCCAGCATGATCTAA |
| bna-miR167c | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| bra-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| bra-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| bra-miR167c | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| bra-miR167d | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| cme-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| cme-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| dpr-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| dpr-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ghr-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ghr-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| gma-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| gma-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| gma-miR167d | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| mdm-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| mdm-miR167c | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| mdm-miR167d | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| mdm-miR167e | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| mdm-miR167f | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| mdm-miR167g | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| mtr-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| nta-miR167d | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| nta-miR167e | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| osa-miR167a-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| osa-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| osa-miR167c-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ptc-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ptc-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ptc-miR167c | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| ptc-miR167d | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| rco-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| rco-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| sbi-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| sbi-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| sbi-miR167i | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| sly-miR167 | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| tae-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| tcc-miR167a | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| tcc-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| vvi-miR167b | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| vvi-miR167d | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| vvi-miR167e | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| zma-miR167a-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| zma-miR167b-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| zma-miR167c-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
| zma-miR167d-5p | TGAAGCTGCCAGCATGATCTA ||||||||||||||||||||| TGAAGCTGCCAGCATGATCTA |
Precursor of miRNA M00037
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch09 | 59575910 | 59575990 | + | UGAAGCUGCCAGCAUGAUCU AAACUUGGCCAUUUAUAAAG AAAAUGGGUGACUAAGGUUA GGUCAUGCUCGGACAGCCUC A | -38.00 | NA | structure |
| SL2.40ch09 | 59584688 | 59584759 | + | UGAAGCUGCCAGCAUGAUCU AAACUUUUCUAUUGCUCCGU ACGAGGAAAGAUCAGAUCAU GUGGCAGCAUCA | -32.60 | NA | structure |
| SL2.40ch09 | 63883415 | 63883487 | + | UGAAGCUGCCAGCAUGAUCU AAACUUACCUAUAAAUUUAU AUUAAGGCAAGAUCAGAUCA UGUGGUUGCUUCA | -27.30 | miRNA* | structure |
| SL2.40ch06 | 45629453 | 45629375 | - | UGAAGCUGCCAGCAUGAUCU AAACUUUCCUUUUAGUUCAA AUAUAAUUCGAGGAAAGAUC AGAUCAUGUGGCAGCCUUA | -32.70 | NA | structure |
