Tomato miRNA M00037

sequenceLengthmiRNA familysRNA IDtarget
UGAAGCUGCCAGCAUGAUCUA21miR167 S23003515 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)767.41
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)253.31
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)74186.57
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)33371.71
S0735Solanum lycopersicumSunnyleaf , TSWV-infected804135931.25
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 30872378.89
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 23071750.1
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 20051428.44
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 1207888.93
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 22351395.55
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 1311835.16
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 1207795.47
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 1297792.92
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 1532917.08
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate342664162.34
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate259213456.52
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate146314542.71
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate245353207.3
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate128633116.67
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate239573780.74
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate110292972.5
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate221061467.13
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate110891453.2
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker208.36
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker99.2
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker10125.42
S0713Solanum lycopersicumMicroTom fruit , breaker stage71.98
S0712Solanum lycopersicumMicroTom fruit , mature green32382.64
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter13364.07
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter3428.25
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter16694.12
S0708Solanum lycopersicumMicroTom flower, open2971916.68
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming2518661.04
S0373Solanum lycopersicumHeinz 1706fruit8525.44
S0372Solanum lycopersicumHeinz 1706flower80422433.84
S0371Solanum lycopersicumHeinz 1706leaf48381457.89

Hits on known miRNAs

hit miRNAalignment
aly-miR167a-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
aly-miR167b-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ath-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ath-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
bdi-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
bdi-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
bna-miR167aTGAAGCTGCCAGCATGATCTA-
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TGAAGCTGCCAGCATGATCTAA
bna-miR167bTGAAGCTGCCAGCATGATCTA-
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TGAAGCTGCCAGCATGATCTAA
bna-miR167cTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
bra-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
bra-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
bra-miR167cTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
bra-miR167dTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
cme-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
cme-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
dpr-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
dpr-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ghr-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ghr-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
gma-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
gma-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
gma-miR167dTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
mdm-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
mdm-miR167cTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
mdm-miR167dTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
mdm-miR167eTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
mdm-miR167fTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
mdm-miR167gTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
mtr-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
nta-miR167dTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
nta-miR167eTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
osa-miR167a-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
osa-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
osa-miR167c-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ptc-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ptc-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ptc-miR167cTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
ptc-miR167dTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
rco-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
rco-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
sbi-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
sbi-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
sbi-miR167iTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
sly-miR167TGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
tae-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
tcc-miR167aTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
tcc-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
vvi-miR167bTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
vvi-miR167dTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
vvi-miR167eTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
zma-miR167a-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
zma-miR167b-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
zma-miR167c-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA
zma-miR167d-5pTGAAGCTGCCAGCATGATCTA
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TGAAGCTGCCAGCATGATCTA

Precursor of miRNA M00037

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch095957591059575990+ UGAAGCUGCCAGCAUGAUCU
A
AACUUGGCCAUUUAUAAAG
AAAAUGGGUGACUAAGGUUA
GGUCAUGCUCGGACAGCCUC
A
-38.00NA structure
SL2.40ch095958468859584759+ UGAAGCUGCCAGCAUGAUCU
A
AACUUUUCUAUUGCUCCGU
ACGAGGAAAGAUCAGAUCAU
GUGGCAGCAUCA
-32.60NA structure
SL2.40ch096388341563883487+ UGAAGCUGCCAGCAUGAUCU
A
AACUUACCUAUAAAUUUAU
AUUAAGGCAAGAUCAGAUCA
UGUGGUUGCUUCA
-27.30miRNA* structure
SL2.40ch064562945345629375- UGAAGCUGCCAGCAUGAUCU
A
AACUUUCCUUUUAGUUCAA
AUAUAAUUCGAGGAAAGAUC
AGAUCAUGUGGCAGCCUUA
-32.70NA structure