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Tomato miRNA M00039
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UCGCUUGGUGCAGGUCGGGAC | 21 | miR168 | S22423035 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 2862 | 278.89 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1169 | 154.95 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 346 | 40.42 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1186 | 255.4 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 157589 | 11623.8 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 650 | 271.81 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 116 | 118.62 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 1161 | 292.23 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 375 | 106.28 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 1066 | 272.73 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 968 | 466.28 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 388 | 322.33 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 625 | 354.38 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 536 | 165.38 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 808 | 212.12 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1483 | 443.88 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1544 | 467.28 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 8707 | 2623.78 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| nta-miR168a | TCGCTTGGTGCAGGTCGGGAC ||||||||||||||||||||| TCGCTTGGTGCAGGTCGGGAC |
| nta-miR168b | TCGCTTGGTGCAGGTCGGGAC ||||||||||||||||||||| TCGCTTGGTGCAGGTCGGGAC |
| nta-miR168c | TCGCTTGGTGCAGGTCGGGAC ||||||||||||||||||||| TCGCTTGGTGCAGGTCGGGAC |
Precursor of miRNA M00039
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 558760 | 558904 | + | UCGCUUGGUGCAGGUCGGGA CCUCAUUCGCCGGCGCCGGG AAUAAUGCCGGACGAACGAC GGCGGUGUUAAUUCUACUAA AGCUGUCACCGACGGAUAGA UGUUUGAUUAGCGGCGAAAU UUGGGUCCUGCCUUGCAUCA ACUGA | -59.80 | NA | structure |
| SL2.40ch12 | 63569025 | 63569158 | + | UCGCUUGGUGCAGGUCGGGA CCUACCUCGCCGGCAACAAU GGCGGUAGCUGACGGCGACG GCAGCGUACCGGUAAAAAAG AAUCUUAUUUUUACAUGUUG UUGCGUAGUUUGGGUCCCGC CUUGCAUCAACUGA | -62.80 | NA | structure |
