Tomato miRNA M00051

sequenceLengthmiRNA familysRNA IDtarget
UUGGACUGAAGGGAGCUCCUU21miR319 S25581462 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)242.34
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)192.52
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)1142133.41
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)2394515.53
S0735Solanum lycopersicumSunnyleaf , TSWV-infected20.15
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker31.25
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker133.27
S0713Solanum lycopersicumMicroTom fruit , breaker stage61.7
S0712Solanum lycopersicumMicroTom fruit , mature green123.07
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter15172.74
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter4234.89
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter7240.82
S0708Solanum lycopersicumMicroTom flower, open164.94
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming18849.36
S0373Solanum lycopersicumHeinz 1706fruit10.3
S0372Solanum lycopersicumHeinz 1706flower20.61
S0371Solanum lycopersicumHeinz 1706leaf30.9

Hits on known miRNAs

hit miRNAalignment
aly-miR319c-3pTTGGACTGAAGGGAGCTCCTT
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TTGGACTGAAGGGAGCTCCTT
aly-miR319d-3pTTGGACTGAAGGGAGCTCCTT
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TTGGACTGAAGGGAGCTCCTT
ath-miR319cTTGGACTGAAGGGAGCTCCTT
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TTGGACTGAAGGGAGCTCCTT
gma-miR319gTTGGACTGAAGGGAGCTCCTT-
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TTGGACTGAAGGGAGCTCCTTC
gma-miR319lTTGGACTGAAGGGAGCTCCTT-
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TTGGACTGAAGGGAGCTCCTTC
pvu-miR319cTTGGACTGAAGGGAGCTCCTT
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TTGGACTGAAGGGAGCTCCTT
rco-miR319dTTGGACTGAAGGGAGCTCCTT
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TTGGACTGAAGGGAGCTCCTT

Precursor of miRNA M00051

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch034989846549898640+ AAGAGAGCUUCCUUCAGCCC
ACUCACGGAGGAGAAAUGGG
GUUGAAUUAGCUGCCGACUC
AUUCAUCCAACCACUCAGUA
GAAAGGAUAGGUUUUGUGCU
ACUGUGAUUGAGUGAAUGAU
GCGGGAGAUAGUUUUCUAUC
CCUCUCUUUCCUUGCUUGGA
CUGAAGGGAGCUCCUU
-77.50NA structure