Tomato miRNA M00061

sequenceLengthmiRNA familysRNA IDtarget
UUCCACAGCUUUCUUGAACUU21miR396 S25045581 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)1088106.02
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)48263.89
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)96161123.36
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)77721673.65
S0735Solanum lycopersicumSunnyleaf , TSWV-infected38928.69
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 12394.79
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 140106.2
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 8157.71
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 7857.45
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 267166.72
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 166105.75
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 186122.58
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 13984.98
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 8852.68
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3356347.35
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate2597348.51
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1584572.87
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate2567401
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate1344374.48
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate2372355.43
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate187251.32
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate2289201.33
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1124165.47
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker104.18
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker1212.27
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker5513.84
S0713Solanum lycopersicumMicroTom fruit , breaker stage287.94
S0712Solanum lycopersicumMicroTom fruit , mature green9825.07
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter4220.23
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter54.15
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter116.24
S0708Solanum lycopersicumMicroTom flower, open3912.03
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming23661.96
S0373Solanum lycopersicumHeinz 1706fruit432129.3
S0372Solanum lycopersicumHeinz 1706flower402121.66
S0371Solanum lycopersicumHeinz 1706leaf376113.3

Hits on known miRNAs

hit miRNAalignment
aly-miR396b-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
aqc-miR396bTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
ath-miR396bTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
bcy-miR396bTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
bdi-miR396eTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
bgy-miR396bTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
bna-miR396aTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
cca-miR396a-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
ccl-miR396TTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
cme-miR396aTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
cme-miR396cTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
cme-miR396dTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
gma-miR396b-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
gma-miR396cTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
mdm-miR396cTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
mdm-miR396dTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
mdm-miR396eTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
mtr-miR396a-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
nta-miR396bTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
nta-miR396cTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
osa-miR396c-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
pta-miR396TTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
ptc-miR396cTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
ptc-miR396dTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
ptc-miR396e-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
rco-miR396TTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
sbi-miR396cTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
tcc-miR396cTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
tcc-miR396eTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
zma-miR396e-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT
zma-miR396f-5pTTCCACAGCTTTCTTGAACTT
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TTCCACAGCTTTCTTGAACTT

Precursor of miRNA M00061

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch0726288732628773- UUCCACAGCUUUCUUGAACU
U
CUUCUUGCUAAAUUUUGAU
CUCUAAAUUGAUAAUUUUGA
GAUGAGAUUUGAAGCUAUGA
AAGUCCAAGAAAGCUGUGGG
A
-40.20NA structure