Tomato miRNA M00065

sequenceLengthmiRNA familysRNA IDtarget
UACGCAGGAGAGAUGAUGCUG21miR4376 S20850097 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)131.27
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)678.88
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)536.19
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)10.22
S0735Solanum lycopersicumSunnyleaf , TSWV-infected1932142.5
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker102.52
S0713Solanum lycopersicumMicroTom fruit , breaker stage10.28
S0712Solanum lycopersicumMicroTom fruit , mature green5814.84
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter52.41
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter10.83
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter1910.77
S0708Solanum lycopersicumMicroTom flower, open370114.16
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming390102.39
S0373Solanum lycopersicumHeinz 1706fruit9227.54
S0372Solanum lycopersicumHeinz 1706flower30692.61
S0371Solanum lycopersicumHeinz 1706leaf1530461.05

Hits on known miRNAs

hit miRNAalignment
gma-miR4376-5pTACGCAGGAGAGATGATGCTG-
||||||||||||||||x||||x
TACGCAGGAGAGATGACGCTGT

Precursor of miRNA M00065

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy		miRNA*structure
SL2.40ch0645418894541962+ UACGCAGGAGAGAUGAUGCU
GGACGAUAGAGAAAAUGGGA
UUUAAUUUAUUGGCCAGCAU
CAUACUCCUGCAUA		-36.50NA structure