Tomato miRNA M00066
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| UACGCAGGAGAGAUGAUGCUGG | 22 | miR4376 |
S20850098
| NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 12 | 1.17 | | S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 65 | 8.62 | | S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 9 | 1.05 | | S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 2 | 0.43 | | S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1092 | 80.55 | | S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 8 | 2.05 | | S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 2 | 0.96 | | S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1 | 0.57 | | S0708 | Solanum lycopersicum | MicroTom | flower, open | 92 | 28.39 | | S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 73 | 19.16 | | S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 51 | 15.27 | | S0372 | Solanum lycopersicum | Heinz 1706 | flower | 178 | 53.87 | | S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 735 | 221.49 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|
| gma-miR4376-5p | TACGCAGGAGAGATGATGCTGG
||||||||||||||||x||||x
TACGCAGGAGAGATGACGCTGT |
Precursor of miRNA M00066
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand | sequence |
folding
energy | miRNA* | structure |
|---|
| SL2.40ch06 | 4541889 | 4541962 | + |
UACGCAGGAGAGAUGAUGCU
GGACGAUAGAGAAAAUGGGA
UUUAAUUUAUUGGCCAGCAU
CAUACUCCUGCAUA | -36.50 | NA |
structure |
|
