Tomato miRNA M00067

sequenceLengthmiRNA familysRNA IDtarget
ACGCAGGAGAGAUGAUGCUGGA22miR4376 S05138366 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)232.24
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)23030.49
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)364.21
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)71.51
S0735Solanum lycopersicumSunnyleaf , TSWV-infected6411472.87
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker135.44
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker276.8
S0713Solanum lycopersicumMicroTom fruit , breaker stage226.24
S0712Solanum lycopersicumMicroTom fruit , mature green18948.35
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter5225.05
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter1714.12
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter10358.4
S0708Solanum lycopersicumMicroTom flower, open737227.4
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming854224.2
S0373Solanum lycopersicumHeinz 1706fruit369110.45
S0372Solanum lycopersicumHeinz 1706flower1043315.66
S0371Solanum lycopersicumHeinz 1706leaf37911142.39

Hits on known miRNAs

hit miRNAalignment
sly-miR4376ACGCAGGAGAGATGATGCTGGA
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ACGCAGGAGAGATGATGCTGGA

Precursor of miRNA M00067

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy		miRNA*structure
SL2.40ch0645418904541961+ ACGCAGGAGAGAUGAUGCUG
GACGAUAGAGAAAAUGGGAU
UUAAUUUAUUGGCCAGCAUC
AUACUCCUGCAU		-36.50NA structure