Tomato miRNA M00069

sequenceLengthmiRNA familysRNA IDtarget
UCUUUCCUACUCCUCCCAUACC22miR482 S22848265 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)1498145.97
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)1253166.08
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)2692314.49
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)3887837.04
S0735Solanum lycopersicumSunnyleaf , TSWV-infected1760129.82
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 361278.19
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 275208.62
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 175124.68
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 13498.69
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 391244.14
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 289184.11
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 255168.06
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 221135.11
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 14285
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3456444.92
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate21218711.04
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1543532.65
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate2879621.66
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate1317345.09
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate2429409.89
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate1240693.29
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate2632440.28
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1279372.31
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker20.84
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker44.09
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker4812.08
S0713Solanum lycopersicumMicroTom fruit , breaker stage102.83
S0712Solanum lycopersicumMicroTom fruit , mature green184.61
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter94.34
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter86.65
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter73.97
S0708Solanum lycopersicumMicroTom flower, open164.94
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming4511.81
S0373Solanum lycopersicumHeinz 1706fruit9327.84
S0372Solanum lycopersicumHeinz 1706flower6519.67
S0371Solanum lycopersicumHeinz 1706leaf7322

Hits on known miRNAs

hit miRNAalignment
ghr-miR482aTCTTTCCTACTCCTCCCATACC
||||||||||||||||||||||
TCTTTCCTACTCCTCCCATACC

Precursor of miRNA M00069

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy		miRNA*structure
SL2.40ch045514226555142338+ GGUUGUGGGUGGGGUGGAAA
GAUUUGAUAAAUCUAAUUUU
AAAGAGAUUAAAUCUUUCCU
ACUCCUCCCAUACC		-36.30NA structure