Tomato miRNA M00070

sequenceLengthmiRNA familysRNA IDtarget
UGUGGGUGGGGUGGAAAGAUU21miR5301 S24121304 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)40639.56
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)73297.02
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)4998583.88
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)900193.81
S0735Solanum lycopersicumSunnyleaf , TSWV-infected2521185.95
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 3526.97
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 3728.07
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 2517.81
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 2719.88
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 4226.23
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 2314.65
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 5133.61
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 4326.29
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 2615.56
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate398.78
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate22715.76
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate12221.58
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate23323.34
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate13133.75
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate24946.82
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate12366.44
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate24732.74
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate16384.07
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker218.78
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker77.16
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker379.31
S0713Solanum lycopersicumMicroTom fruit , breaker stage339.35
S0712Solanum lycopersicumMicroTom fruit , mature green7017.91
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter11153.47
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter4940.71
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter9352.73
S0708Solanum lycopersicumMicroTom flower, open185.55
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming328.4
S0373Solanum lycopersicumHeinz 1706fruit61.8
S0372Solanum lycopersicumHeinz 1706flower72.12
S0371Solanum lycopersicumHeinz 1706leaf103.01

Hits on known miRNAs

hit miRNAalignment
sly-miR5301TGTGGGTGGGGTGGAAAGATT
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TGTGGGTGGGGTGGAAAGATT

Precursor of miRNA M00070

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy		miRNA*structure
SL2.40ch045514226855142336+ UGUGGGUGGGGUGGAAAGAU
UUGAUAAAUCUAAUUUUAAA
GAGAUUAAAUCUUUCCUACU
CCUCCCAUA		-34.10miRNA* structure