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Tomato miRNA M00071
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGGAAGGGAGAAUAUCCAGGA | 21 | miR6022 | S23592696 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 14381 | 1401.35 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 17846 | 2365.4 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 15829 | 1849.18 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1636 | 352.3 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 54714 | 4035.7 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 797 | 333.28 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 67 | 68.51 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 590 | 148.51 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 176 | 49.88 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 246 | 62.94 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 71 | 34.2 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 57 | 47.35 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 80 | 45.36 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 107 | 33.01 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 190 | 49.88 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 18627 | 5575.32 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 4350 | 1316.49 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 15496 | 4669.59 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| sly-miR6022 | TGGAAGGGAGAATATCCAGGA ||||||||||||||||||||| TGGAAGGGAGAATATCCAGGA |
| stu-miR6022 | TGGAAGGGAGAATATCCAGGA ||||||||||||||||||||| TGGAAGGGAGAATATCCAGGA |
Precursor of miRNA M00071
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 3158695 | 3158905 | + | UCCUGGAUAUUAUCCUUUCC AUCACUAACUUAUUUCGGCU CAAAGUUUUAAGUUGCAAGG UACUCUUCCUAAGUCAAUUC AAAACUUCAUGAACCUAACG CGACUUGAUCUUAAGUUACA UUUUACGAAACCUCAAUCUU GGGUAGAGGACCGUGCAAUU GGUUAAAACUCGGUCUAAAU AACUUAGUGAUGGAAGGGAG AAUAUCCAGGA | -84.70 | NA | structure |
