Tomato miRNA M00073

sequenceLengthmiRNA familysRNA IDtarget
UUUUAGCAAGAGUUGUUUUACC22miR6024 S26546580 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)180141755.37
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)195492591.13
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)59769.74
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)533114.78
S0735Solanum lycopersicumSunnyleaf , TSWV-infected1520112.12
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker10.42
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker133.27
S0712Solanum lycopersicumMicroTom fruit , mature green30.77
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter10.48
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter32.49
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter52.84
S0708Solanum lycopersicumMicroTom flower, open7021.6
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming71.84
S0373Solanum lycopersicumHeinz 1706fruit21062.86
S0372Solanum lycopersicumHeinz 1706flower20461.74
S0371Solanum lycopersicumHeinz 1706leaf390117.52

Hits on known miRNAs

hit miRNAalignment
sly-miR6024TTTTAGCAAGAGTTGTTTTACC
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TTTTAGCAAGAGTTGTTTTACC

Precursor of miRNA M00073

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch017499981274999734- GGAGAAACAACACUUGCUAA
AGGAAGUUCACCAGUCAUCU
CUUUUCUUUUGGAGUUUUUU
UAGCAAGAGUUGUUUUACC
-29.10NA structure