Tomato miRNA M00075

sequenceLengthmiRNA familysRNA IDtarget
UGAAUCCUUCGGCUAUCCAUA21miR6027 S23042498 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)13012.67
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)689.01
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)29834.81
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)12927.78
S0735Solanum lycopersicumSunnyleaf , TSWV-infected5991441.9
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker239.62
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker1616.36
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker17143.04
S0713Solanum lycopersicumMicroTom fruit , breaker stage4412.47
S0712Solanum lycopersicumMicroTom fruit , mature green20251.68
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter222106.94
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter6654.83
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter240136.08
S0708Solanum lycopersicumMicroTom flower, open392120.95
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming19551.19
S0373Solanum lycopersicumHeinz 1706fruit482144.27
S0372Solanum lycopersicumHeinz 1706flower24473.84
S0371Solanum lycopersicumHeinz 1706leaf23069.31

Hits on known miRNAs

hit miRNAalignment
sly-miR6027TGAATCCTTCGGCTATCCATA-
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TGAATCCTTCGGCTATCCATAA
stu-miR6027TGAATCCTTCGGCTATCCATA-
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TGAATCCTTCGGCTATCCATAA

Precursor of miRNA M00075

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch106218253262182654+ UAUGGGUAGCACAAGGAUUA
AUGUGAAACAGAAAAGUGAU
AUGCAAAGAAGAUGGAGAUU
CAAUUGUUUAUUGUUACGAA
GAAAACACUUUUGUGUUUCU
CGUGAAUCCUUCGGCUAUCC
AUA
-43.50miRNA* structure