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Tomato miRNA M00076
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGAAUCCUUCGGCUAUCCAUAA | 22 | miR6027 | S23042499 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 124 | 12.08 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 82 | 10.87 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 633 | 73.95 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 99 | 21.32 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 16392 | 1209.07 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 628 | 262.61 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 160 | 163.61 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 2531 | 637.07 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 615 | 174.31 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 3667 | 938.17 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 1029 | 495.67 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 395 | 328.14 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1308 | 741.64 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 8334 | 2571.41 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 1819 | 477.54 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 2623 | 785.1 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1737 | 525.69 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 834 | 251.32 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| sly-miR6027 | TGAATCCTTCGGCTATCCATAA |||||||||||||||||||||| TGAATCCTTCGGCTATCCATAA |
| stu-miR6027 | TGAATCCTTCGGCTATCCATAA |||||||||||||||||||||| TGAATCCTTCGGCTATCCATAA |
Precursor of miRNA M00076
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch10 | 62182531 | 62182655 | + | UUAUGGGUAGCACAAGGAUU AAUGUGAAACAGAAAAGUGA UAUGCAAAGAAGAUGGAGAU UCAAUUGUUUAUUGUUACGA AGAAAACACUUUUGUGUUUC UCGUGAAUCCUUCGGCUAUC CAUAA | -44.50 | NA | structure |
