Tomato miRNA M00077

sequenceLengthmiRNA familysRNA IDtarget
GUGCGAGGGGGCGACGCGA19NA S19488162 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)89387.02
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)38851.43
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)141.64
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)629135.45
S0735Solanum lycopersicumSunnyleaf , TSWV-infected141.03
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker41.01
S0712Solanum lycopersicumMicroTom fruit , mature green20.51
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter12962.14
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter2117.45
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter21.13
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming123.15
S0373Solanum lycopersicumHeinz 1706fruit226.58
S0372Solanum lycopersicumHeinz 1706flower41.21
S0371Solanum lycopersicumHeinz 1706leaf72.11

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00077

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch015968256759682781+ GUGCGAGGGGGCGACGCGAU
GCGUGACGCACAGGCAGACG
UGCCCUCGGCCAAUUGGCUU
CAGGCGUAACUUGCGUUCAA
AGACUCAAUGGUUCACGGGA
UUCUGCAAUUCACACCAAGU
AUCGCAUUUCGCUACGUUCU
UCAUUGAUGCAAGAGCUGAG
AUAUCCGUUAUCGAGAGUCG
UUUGUGUUCACAGAGCAGCG
CGCUUCCCCGCGCAC
-75.50NA structure